{"id":"W3087110225","doi":"10.17504/protocols.io.bisbkean","title":"SARS-CoV-2 McGill Nextera Flex sequencing protocol_SS_V3_LA1_5uLRT v1","year":2020,"lang":"en","type":"preprint","venue":"","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre","funders":"","keywords":"Amplicon; Adapter (computing); DNA; Biology; Library; Computational biology; Molecular biology; Genetics; Polymerase chain reaction; Gene; Computer science; Computer hardware","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002980015,0.002088075,0.0018094,0.002110178,0.001761001,0.00267878,0.002718241,0.001919188,0.0585757],"category_scores_gemma":[0.003364924,0.002597338,0.001608772,0.001165431,0.0008032087,0.001380371,0.001571623,0.004269242,0.0765487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001186086,"about_ca_system_score_gemma":0.002531916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003670667,"about_ca_topic_score_gemma":0.01376341,"domain_scores_codex":[0.9957739,0.0007197339,0.0003470362,0.001054495,0.001537077,0.0005676602],"domain_scores_gemma":[0.9984433,0.0002389733,0.0001207649,0.0004492564,0.0005641502,0.0001834846],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006862087,0.0002168958,0.001893754,0.001227831,0.00009898641,0.0003015127,0.0004121982,0.001352876,0.7943081,0.005559383,0.1247776,0.06916469],"study_design_scores_gemma":[0.0001303796,0.000551185,0.003974892,0.0003360515,0.0001119022,0.000912828,0.0001601749,0.005104093,0.3912576,0.002363463,0.5948551,0.0002422544],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.04506426,0.005446388,0.6681143,0.002551352,0.002180435,0.0112997,0.1206439,0.04364989,0.1010498],"genre_scores_gemma":[0.04994801,0.002928398,0.5523072,0.003648269,0.0003475096,0.009739309,0.2529811,0.01410377,0.1139963],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.0585757,"threshold_uncertainty_score":0.1959553,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1701523865709804,"score_gpt":0.3707750291820041,"score_spread":0.2006226426110237,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}