{"id":"W3087269677","doi":"10.1097/qad.0000000000002690","title":"Differential utilization of CD4+ by transmitted/founder and chronic envelope glycoproteins in a MSM HIV-1 subtype B transmission cluster","year":2020,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Viral quasispecies; Biology; Virology; Maraviroc; Transmission (telecommunications); Glycoprotein; Genotype; Context (archaeology); Genetics; Infectivity; Virus; Immunology; Gene; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003425619,0.0002355195,0.0002284178,0.0006566813,0.000600957,0.0005673457,0.0002345073,0.0002799309,0.001337635],"category_scores_gemma":[0.0007603492,0.0001827954,0.0001296203,0.0003070561,0.000229229,0.0002424126,0.0003445392,0.0001691285,0.0001673842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001683687,"about_ca_system_score_gemma":0.0002041554,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003069406,"about_ca_topic_score_gemma":0.002301129,"domain_scores_codex":[0.9997585,0.00005613059,0.00001978465,0.00006922218,0.00004282788,0.00005358205],"domain_scores_gemma":[0.9998032,0.00003820934,0.00005096394,0.00001671632,0.00004013871,0.00005067751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001363415,0.0002179479,0.8988886,0.00006764439,0.00007607662,0.001413518,0.004822923,0.00009040079,0.08423705,0.000162506,0.0001239435,0.008535841],"study_design_scores_gemma":[0.00004210551,0.001447863,0.9775627,0.00002599434,0.00008385444,0.005444103,0.00470675,0.0009012364,0.009042419,0.0001938923,0.0005298703,0.00001932664],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998416,0.00002341251,0.00003868453,0.000003093082,3.442318e-7,0.000004523895,0.00001860077,0.000001254082,0.00006845325],"genre_scores_gemma":[0.999709,0.00002602639,0.0001011375,0.000009502781,0.000002265761,0.000006390424,0.00005083007,0.000002147492,0.00009270896],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003069406,"threshold_uncertainty_score":0.006103098,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01904439793190761,"score_gpt":0.2532481865172279,"score_spread":0.2342037885853203,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}