{"id":"W3087432183","doi":"10.1101/2020.09.18.302992","title":"Piperacillin/tazobactam resistant, cephalosporin susceptible <i>Escherichia coli</i> bloodstream infections are driven by multiple acquisition of resistance across diverse sequence types","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Hospital Foundation","funders":"Medical Research Council; National Institute for Health and Care Research; UK Research and Innovation","keywords":"Phenotype; Gene; Genotype; Mutation; Carriage; Plasmid; DNA sequencing; Multilocus sequence typing; Antibiotic resistance","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004166033,0.0002329241,0.0003677105,0.0009867046,0.0002791689,0.0008778107,0.0001718751,0.0002125788,0.002062165],"category_scores_gemma":[0.001729055,0.0001762539,0.0002892554,0.001622782,0.0002816471,0.0003232278,0.0005903798,0.0004114215,0.0005462658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004270501,"about_ca_system_score_gemma":0.0004223776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007722823,"about_ca_topic_score_gemma":0.01317066,"domain_scores_codex":[0.9990094,0.0001507894,0.0001456069,0.0002930863,0.0002583613,0.0001427349],"domain_scores_gemma":[0.9974424,0.0002451267,0.001598692,0.0001915141,0.0003652819,0.000157055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003730747,0.00007078083,0.8846813,0.0003800543,0.0001552671,0.0003955386,0.0006892762,0.0002169317,0.08864494,0.0001500548,0.002083086,0.02215966],"study_design_scores_gemma":[0.000005080198,0.00008100256,0.9923281,0.00004802489,0.00002689368,0.0009640052,0.0003423835,0.0001341394,0.003798109,0.00003626537,0.002227803,0.000008265893],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933164,0.0004324359,0.0004797112,0.0001081559,0.000006778232,0.00002676502,0.004526768,0.00002989416,0.001073178],"genre_scores_gemma":[0.9908879,0.0003619097,0.001230244,0.0001299879,0.00001344527,0.00002753223,0.006984567,0.00001508797,0.0003493394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007722823,"threshold_uncertainty_score":0.01535577,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01368812239979623,"score_gpt":0.2395637967441079,"score_spread":0.2258756743443117,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}