{"id":"W3087718837","doi":"10.17504/protocols.io.bjajkicn","title":"SARS-CoV-2 McGill Nanopore sequencing protocol SuperScript IV_42C_ArticV3 v1","year":2020,"lang":"en","type":"preprint","venue":"","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre","funders":"","keywords":"Nanopore sequencing; Nanopore; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Protocol (science); DNA sequencing; Biology; Medicine; Nanotechnology; Genetics; Materials science; Infectious disease (medical specialty); Gene; Pathology; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001446128,0.00208073,0.001401745,0.001113013,0.001141683,0.001181424,0.001439396,0.001358666,0.0375841],"category_scores_gemma":[0.003454088,0.001818694,0.0009163936,0.001014098,0.0005399143,0.0007536483,0.0006938593,0.002937196,0.05284475],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001027261,"about_ca_system_score_gemma":0.002545091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003800582,"about_ca_topic_score_gemma":0.007913009,"domain_scores_codex":[0.998318,0.00034373,0.0001520472,0.0004322061,0.0004470166,0.0003070379],"domain_scores_gemma":[0.9983934,0.0004282385,0.00008489437,0.000470992,0.0004746715,0.0001478998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005558157,0.000121724,0.000250662,0.0005976827,0.00004937621,0.0001925043,0.0001794598,0.0006941365,0.9031573,0.00899513,0.06272689,0.02247935],"study_design_scores_gemma":[0.00009923754,0.0001519137,0.0007756135,0.00008934612,0.00006490671,0.0003389586,0.00004195187,0.003228498,0.6762878,0.002854305,0.3159945,0.00007298326],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.03594299,0.003114785,0.7801061,0.001615646,0.001869159,0.004915648,0.08509295,0.01103828,0.0763045],"genre_scores_gemma":[0.06198036,0.002630511,0.4997765,0.001527234,0.0003170976,0.004439841,0.243347,0.007126284,0.1788552],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.0375841,"threshold_uncertainty_score":0.1257313,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05588079122210562,"score_gpt":0.319534165115856,"score_spread":0.2636533738937504,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}