{"id":"W3088343558","doi":"10.1101/2020.09.28.316604","title":"Host transcriptomic profiling of COVID-19 patients with mild, moderate, and severe clinical outcomes","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"COVID-19 Clinical Research Studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"Mohammed Bin Rashid University of Medicine and Health Sciences","keywords":"Transcriptome; CXCL9; Immunology; Cytokine; Chemokine; Signal transduction; Biology; Disease; Gene expression profiling; Immune system; Computational biology; Bioinformatics; Gene; Gene expression; CXCL10; Medicine; Genetics; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001713306,0.0001902476,0.0003340155,0.0004575028,0.000248506,0.00045784,0.00009351732,0.000217882,0.001525385],"category_scores_gemma":[0.0003978701,0.00007538273,0.0001838319,0.0004883957,0.0001962105,0.000148192,0.0003048623,0.0002906074,0.0002487451],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001722759,"about_ca_system_score_gemma":0.000125604,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003858197,"about_ca_topic_score_gemma":0.0004872425,"domain_scores_codex":[0.9998615,0.00002244312,0.00001181961,0.00003963841,0.0000240702,0.0000405514],"domain_scores_gemma":[0.9997968,0.00003879867,0.00007056297,0.00001336777,0.00002708351,0.00005346792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003970563,0.0001275528,0.7858326,0.0001335076,0.0001251923,0.001506531,0.0003807354,0.0002735808,0.1928094,0.0001341671,0.0007859527,0.01392027],"study_design_scores_gemma":[0.00002196661,0.0004744727,0.9894894,0.00001431613,0.00004963938,0.001313077,0.0004717042,0.0006234114,0.006477815,0.0001213758,0.0009333494,0.000009515511],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979519,0.0002087961,0.0001973598,0.00003039624,0.000006042049,0.00001434652,0.001187254,0.000007803103,0.0003960017],"genre_scores_gemma":[0.9970343,0.0001123817,0.0002794886,0.00004755642,0.00001046478,0.00002322155,0.002165075,0.000005325495,0.0003222234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001525385,"threshold_uncertainty_score":0.005102873,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05913266497081826,"score_gpt":0.3557898680156832,"score_spread":0.296657203044865,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}