{"id":"W3088359649","doi":"10.3389/fgene.2020.538600","title":"Genomic Heritability and Genome-Wide Association Studies of Plasma Metabolites in Crossbred Beef Cattle","year":2020,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Ministry of Agriculture and Forestry; University of Alberta","funders":"Alberta Innovates; Alberta Livestock and Meat Agency; University of Alberta","keywords":"Heritability; Biology; Single-nucleotide polymorphism; Metabolome; Genetics; Metabolomics; SNP; Genetic variation; Genetic association; Genome-wide association study; In silico; Candidate gene; SNP array; Gene; Genotype; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001645923,0.0002936541,0.0003347729,0.001302163,0.0003559208,0.0004661972,0.0002848203,0.0003126358,0.001389486],"category_scores_gemma":[0.001989224,0.0002094259,0.0005029919,0.001056257,0.0003684921,0.0001452702,0.0003542561,0.0002756915,0.00008616228],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003752364,"about_ca_system_score_gemma":0.00024672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02143857,"about_ca_topic_score_gemma":0.01673672,"domain_scores_codex":[0.9989248,0.0002623611,0.0000772513,0.0004219144,0.000190364,0.0001231976],"domain_scores_gemma":[0.9985211,0.0007745436,0.0003182804,0.000169041,0.000130323,0.00008668948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006276242,0.00004505417,0.9556451,0.00005022686,0.001143559,0.0004699776,0.0005486528,0.001270104,0.02977353,0.0002103332,0.0001062525,0.01010956],"study_design_scores_gemma":[0.000003485871,0.00001953476,0.9990344,0.000002383673,0.00008027344,0.00006638705,0.00004021885,0.0004064924,0.0002603462,0.00001927376,0.00006446308,0.000002760659],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985608,0.0002277646,0.0007726396,0.00001120148,0.000002049203,0.000002891997,0.0002626355,0.00001263168,0.0001473839],"genre_scores_gemma":[0.999069,0.00006154369,0.0005055549,0.000006103945,0.000003141325,0.000003615933,0.0002726504,0.000005769637,0.00007260164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02143857,"threshold_uncertainty_score":0.04262757,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01426328072552021,"score_gpt":0.2388559945502642,"score_spread":0.2245927138247439,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}