{"id":"W3088793221","doi":"10.1101/2020.09.23.310565","title":"COVID-19 CG: Tracking SARS-CoV-2 mutations by locations and dates of interest","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Stanley Center for Psychiatric Research, Broad Institute; National Institute of Neurological Disorders and Stroke; National Institute of Mental Health; Scheme for Promotion of Academic and Research Collaboration; Broad Institute","keywords":"Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Virology; Biology; Medicine; Outbreak; Internal medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003564841,0.001194159,0.001028702,0.003156223,0.0009305226,0.002364049,0.00132347,0.001109232,0.03830349],"category_scores_gemma":[0.007266217,0.0007771086,0.0007514023,0.002275357,0.0003299545,0.001703004,0.00192439,0.001039278,0.025084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008642771,"about_ca_system_score_gemma":0.001895742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005995275,"about_ca_topic_score_gemma":0.008736707,"domain_scores_codex":[0.9987134,0.0001573888,0.0001239091,0.0003962162,0.0004863038,0.0001227998],"domain_scores_gemma":[0.996968,0.0008154178,0.0004013859,0.0008432619,0.0005651811,0.0004067537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.002046676,0.0001949893,0.04098012,0.0008035395,0.0002180424,0.0005510362,0.0005535622,0.002703689,0.02396727,0.005240012,0.8084386,0.1143024],"study_design_scores_gemma":[0.000659919,0.0002939191,0.04882793,0.0003369575,0.0001479962,0.00140339,0.0002829315,0.03593271,0.04439331,0.01080021,0.8565587,0.0003620088],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.04415098,0.001482502,0.06886176,0.001702157,0.001241933,0.000706192,0.568029,0.2643455,0.04948],"genre_scores_gemma":[0.1231479,0.001329904,0.1874271,0.001290808,0.0004448378,0.0007716775,0.6263816,0.03568139,0.0235248],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.03830349,"threshold_uncertainty_score":0.1281379,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09670686777087238,"score_gpt":0.3467287701898896,"score_spread":0.2500219024190172,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}