{"id":"W3090693048","doi":"10.3390/antibiotics9100663","title":"From Orphan Phage to a Proposed New Family–The Diversity of N4-Like Viruses","year":2020,"lang":"en","type":"article","venue":"Antibiotics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":79,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Medical Research Council; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences","keywords":"Genome; Biology; Virus classification; Bacterial virus; Computational biology; Genetics; Virology; Bacteriophage; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00002577057,0.00008066269,0.0001023349,0.00000732537,0.0001252152,0.00002138393,0.0002749594,0.00003247055,0.00121184],"category_scores_gemma":[0.00001774822,0.00006205176,0.00005299751,0.0001634171,0.00007257645,0.0001001883,0.0006100207,0.00007805807,0.0009731557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002354043,"about_ca_system_score_gemma":0.000009079705,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006625957,"about_ca_topic_score_gemma":0.0003454838,"domain_scores_codex":[0.9994674,0.00001831069,0.0001147016,0.0001726233,0.0001036153,0.0001233616],"domain_scores_gemma":[0.9996462,0.00002216714,0.00005096601,0.0001596693,0.000005598322,0.0001153907],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002327006,0.00004199386,0.006289159,0.000002585912,0.00001587347,0.000005191048,0.002105798,0.00003588432,0.9580967,0.000005155565,0.03182423,0.001554089],"study_design_scores_gemma":[0.0004267874,0.0002359281,0.2760867,0.00002654911,0.00008983306,0.000001882998,0.0008721527,0.0001564346,0.5913249,0.00004488076,0.1304851,0.0002489131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961789,0.00001000213,0.001150974,0.001375954,0.0002045291,0.0001533084,0.00006416788,0.00002250257,0.0008396406],"genre_scores_gemma":[0.9929781,0.00001082256,0.001790548,0.004666821,0.00008261977,1.954682e-8,0.000004306715,0.000007276527,0.0004594841],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3667719,"threshold_uncertainty_score":0.999989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03535393954455369,"score_gpt":0.2468652659755821,"score_spread":0.2115113264310284,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}