{"id":"W3090858017","doi":"10.2196/24661","title":"Authors' Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on “A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis”","year":2020,"lang":"en","type":"letter","venue":"JMIR Public Health and Surveillance","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Snapshot (computer storage); Coronavirus; 2019-20 coronavirus outbreak; Virology; Pandemic; Contact tracing; Biology; Computer science; Medicine; Outbreak; Infectious disease (medical specialty); Disease","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008633144,0.001137849,0.001721431,0.001451443,0.004554376,0.003998766,0.003079484,0.06328566,0.00928553],"category_scores_gemma":[0.07358663,0.001518363,0.001962322,0.001744504,0.003822137,0.005287299,0.002386931,0.05065263,0.01101012],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00442875,"about_ca_system_score_gemma":0.006989444,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01920897,"about_ca_topic_score_gemma":0.02063019,"domain_scores_codex":[0.9941327,0.001410765,0.001206377,0.000872376,0.001611956,0.0007657758],"domain_scores_gemma":[0.9714806,0.01687707,0.00181516,0.0008322793,0.006869484,0.002125338],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002599948,0.00000740348,0.0003683866,0.00002688067,0.000007162736,0.0002229648,0.00008410908,0.00002899818,0.00004484628,0.0005601972,0.9969493,0.001673742],"study_design_scores_gemma":[0.0001356285,0.00005770674,0.002091475,0.0005269862,0.00004676618,0.001068735,0.0008439024,0.0005238595,0.0004334912,0.007551344,0.9865736,0.0001464742],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.0001463173,0.00031112,0.0001067711,0.9793292,0.01922792,0.000009541959,0.000193911,0.00004224069,0.0006328519],"genre_scores_gemma":[0.0008977189,0.0002086933,0.0001775466,0.9849309,0.01218328,0.00003125827,0.00004709732,0.00002818372,0.001495361],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.06328566,"threshold_uncertainty_score":0.04565704,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1936944950517138,"score_gpt":0.4266287549967872,"score_spread":0.2329342599450734,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}