{"id":"W3091124585","doi":"10.7717/peerj.9940","title":"The relationship between protein domains and homopeptides in the <i>Plasmodium falciparum</i> proteome","year":2020,"lang":"en","type":"article","venue":"PeerJ","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Asparagine; Proteome; Biology; Biochemistry; Plasmodium falciparum; Amino acid; Alanine; Residue (chemistry); Computational biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001015578,0.0001745783,0.0001991134,0.001136089,0.0003192368,0.0004362052,0.0001128428,0.0001921383,0.00130443],"category_scores_gemma":[0.000243135,0.0001163075,0.0002085364,0.00115086,0.0002821088,0.0003850372,0.0003898464,0.000262793,0.0004572972],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001449092,"about_ca_system_score_gemma":0.0001508413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009037774,"about_ca_topic_score_gemma":0.0011286,"domain_scores_codex":[0.9998791,0.00001041821,0.000008270443,0.00004436136,0.00002938049,0.00002853407],"domain_scores_gemma":[0.9996817,0.00004714615,0.0001512779,0.00001777658,0.00003725234,0.0000648617],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003885845,0.00004016955,0.08885054,0.0004750791,0.0001594161,0.0004269602,0.0002483073,0.0002587277,0.8938614,0.000521599,0.0005365144,0.01423271],"study_design_scores_gemma":[0.000004516449,0.00007394399,0.9666676,0.00002254854,0.00005418842,0.001227198,0.0002795862,0.0007111873,0.02643921,0.0005464266,0.003958758,0.00001480558],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935817,0.002491755,0.0009472104,0.00007261126,0.000005636865,0.000004786825,0.00132447,0.00004109616,0.001530718],"genre_scores_gemma":[0.993295,0.001301101,0.001450491,0.00008677514,0.00001846737,0.00001284477,0.002962485,0.0000201118,0.0008526113],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00130443,"threshold_uncertainty_score":0.004363716,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03616716331943932,"score_gpt":0.2603439264974346,"score_spread":0.2241767631779953,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}