{"id":"W3091340828","doi":"10.1038/s41598-020-73607-x","title":"Subspecies-specific sequence detection for differentiation of Mycobacterium abscessus complex","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Manitoba Health","funders":"Instytut Biologii Medycznej Polskiej Akademii Nauk","keywords":"Subspecies; Mycobacterium abscessus; Biology; rpoB; Genome; Nontuberculous mycobacteria; DNA sequencing; Typing; Genetics; Gene; Computational biology; Mycobacterium; Zoology; Bacteria; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009257724,0.0007268626,0.0007890562,0.002355383,0.0002719961,0.0004885021,0.0004600671,0.0007796435,0.0009968185],"category_scores_gemma":[0.001642948,0.0003844445,0.0006192048,0.001013886,0.0003647915,0.0004476654,0.0008110718,0.0007050494,0.0008974689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001891346,"about_ca_system_score_gemma":0.0003067211,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006491705,"about_ca_topic_score_gemma":0.001467738,"domain_scores_codex":[0.9983979,0.0003568575,0.0001361045,0.000533591,0.0004406915,0.0001348084],"domain_scores_gemma":[0.9987473,0.0004807919,0.0002609412,0.0001259444,0.0002747471,0.0001101345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000159097,0.00008574902,0.01073072,0.0001897236,0.00004447574,0.00007430754,0.00009771166,0.0001329766,0.9699364,0.00007402935,0.000139293,0.01833544],"study_design_scores_gemma":[0.00004546291,0.001067107,0.06623908,0.00006429398,0.0002241798,0.003403786,0.0003153537,0.01446927,0.9059213,0.0003609275,0.007820033,0.00006925143],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8635455,0.005255881,0.1240003,0.0002771009,0.0001549685,0.0003236333,0.002653136,0.0006693341,0.003120237],"genre_scores_gemma":[0.756489,0.001672834,0.2353226,0.0002626492,0.00006620766,0.0002170675,0.004116769,0.00006173093,0.001791092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002355383,"threshold_uncertainty_score":0.004896045,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09577953731186016,"score_gpt":0.3139940835811281,"score_spread":0.2182145462692679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}