{"id":"W3091859163","doi":"10.1097/olq.0000000000001316","title":"Using Epidemiology, Immunology, and Genomics to Study the Biology of Chlamydia trachomatis","year":2020,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control","funders":"","keywords":"Chlamydia trachomatis; Biology; Genomics; Immunology; Infectious disease (medical specialty); Immunity; Immune system; Antigen; Virology; Chlamydia; Genome; Disease; Genetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005222177,0.0002418744,0.000569611,0.0001443731,0.0002912942,0.000008943735,0.0004082947,0.0001765664,0.0002190113],"category_scores_gemma":[0.001292721,0.000175915,0.00009449328,0.0004176343,0.0008944551,0.00007714079,0.0001266004,0.0004137002,0.0000548502],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002698448,"about_ca_system_score_gemma":0.000127638,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003471984,"about_ca_topic_score_gemma":0.00001859133,"domain_scores_codex":[0.9968055,0.001526793,0.00056805,0.0006186761,0.0000333586,0.0004475754],"domain_scores_gemma":[0.9979646,0.001214145,0.0001306626,0.0004701869,0.0001327265,0.00008773255],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007255339,0.001014951,0.4022737,0.00003960524,0.001813966,0.000005418529,0.004875368,0.0001601558,0.554107,0.001199992,0.0001399791,0.03364437],"study_design_scores_gemma":[0.001763064,0.001359661,0.9788339,0.000007917692,0.0003564713,0.00004696062,0.00369767,0.0000458963,0.01086159,0.0008428533,0.001902015,0.0002819805],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9817232,0.01139901,0.002741103,0.002340643,0.0001870805,0.001251549,0.0002254813,0.00008058019,0.0000512827],"genre_scores_gemma":[0.9988087,0.0001445864,0.0003408411,0.0004958729,0.0000545124,0.00007203746,0.00004060088,0.00002609672,0.00001675388],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5765602,"threshold_uncertainty_score":0.7173607,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08427765085162867,"score_gpt":0.3571599074048358,"score_spread":0.2728822565532072,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}