{"id":"W3092159560","doi":"10.1093/bioinformatics/btaa882","title":"DoubleRecViz: a web-based tool for visualizing transcript–gene–species tree reconciliation","year":2020,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Phylogenetic tree; Tree (set theory); Visualization; Toolbox; Python (programming language); Phylogenetic network; Biology; Computer science; Phylogenetics; Gene; Computational biology; Data mining; Genetics; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002377991,0.002858657,0.001760129,0.004536791,0.0009987006,0.0031667,0.003107671,0.002020577,0.05271011],"category_scores_gemma":[0.005804485,0.001317357,0.00254185,0.002928505,0.0005671011,0.003442539,0.003782404,0.003017873,0.01587454],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008011655,"about_ca_system_score_gemma":0.001362418,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003119829,"about_ca_topic_score_gemma":0.003397192,"domain_scores_codex":[0.9990566,0.00016319,0.00007965894,0.0002717961,0.0003134048,0.0001151957],"domain_scores_gemma":[0.998328,0.0008518625,0.0002067871,0.0002164031,0.0002520623,0.0001447804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001558505,0.0002444965,0.007981116,0.005906671,0.000825721,0.001607485,0.003212158,0.01583652,0.05306857,0.02176438,0.6953471,0.1926473],"study_design_scores_gemma":[0.0006835234,0.0002252185,0.01380592,0.001418994,0.0003544482,0.002008108,0.0009008289,0.2005255,0.07092528,0.06167573,0.6466671,0.0008093318],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01163245,0.001141412,0.362646,0.0008481082,0.0005805324,0.0002982067,0.07924086,0.5356597,0.00795285],"genre_scores_gemma":[0.1022759,0.001499324,0.6058292,0.001280801,0.0002112797,0.002072149,0.1268056,0.1510374,0.008988377],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.05271011,"threshold_uncertainty_score":0.1763329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04008395639011875,"score_gpt":0.2512190770131791,"score_spread":0.2111351206230604,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}