{"id":"W3092277989","doi":"10.1093/glycob/cwaa095","title":"Structural evidence for a proline-specific glycopeptide recognition domain in an O-glycopeptidase","year":2020,"lang":"en","type":"article","venue":"Glycobiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Saskatchewan; Canadian Light Source","keywords":"Glycan; Glycopeptide; Threonine; Glycosylation; Chemistry; Glycoprotein; Biochemistry; Proteolysis; Serine; Mucin; Peptide sequence; Phosphorylation; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007994813,0.000249205,0.0001734561,0.0001170418,0.0001756163,0.0002595512,0.0004258826,0.0004829137,0.001015803],"category_scores_gemma":[0.0002463063,0.0001261538,0.0003008062,0.0001767991,0.0002301771,0.0002181697,0.0002292139,0.000686735,0.0004328751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002542284,"about_ca_system_score_gemma":0.0002546714,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008904278,"about_ca_topic_score_gemma":0.0005105233,"domain_scores_codex":[0.9999329,0.000007400525,0.000005371057,0.00001528278,0.00002389381,0.0000151813],"domain_scores_gemma":[0.9998446,0.00002433169,0.00004431881,0.00001259921,0.00001841191,0.00005578447],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003059584,0.0001000583,0.002770472,0.0001381373,0.00003585519,0.002283846,0.00006795209,0.0005299357,0.9892123,0.0008587357,0.0004320629,0.003264663],"study_design_scores_gemma":[0.0001786102,0.0009705946,0.06723154,0.00007501064,0.0001637549,0.009470855,0.0003139363,0.01401807,0.8830832,0.001330618,0.02309779,0.00006586712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919487,0.001645278,0.003202503,0.0002782386,0.00008580564,0.00002432716,0.0003668682,0.00005716427,0.002391042],"genre_scores_gemma":[0.9946706,0.0005803397,0.00300472,0.0001225231,0.00002134634,0.00000845331,0.0007117078,0.000006224912,0.0008740891],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001015803,"threshold_uncertainty_score":0.00339824,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1401353577050172,"score_gpt":0.3556923809167757,"score_spread":0.2155570232117585,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}