{"id":"W3092277989","doi":"10.1093/glycob/cwaa095","title":"Structural evidence for a proline-specific glycopeptide recognition domain in an O-glycopeptidase","year":2020,"lang":"en","type":"article","venue":"Glycobiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Saskatchewan; Canadian Light Source","keywords":"Glycan; Glycopeptide; Threonine; Glycosylation; Chemistry; Glycoprotein; Biochemistry; Proteolysis; Serine; Mucin; Peptide sequence; Phosphorylation; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003557016,0.0002508142,0.0002751095,0.00009696985,0.0001073582,0.00004587116,0.0003818799,0.0002998426,0.0001919871],"category_scores_gemma":[0.0004801227,0.0002363454,0.000113913,0.000248112,0.0001465775,0.00002737884,0.0001318874,0.0002170168,0.00009977953],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003516844,"about_ca_system_score_gemma":0.0001292012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002283157,"about_ca_topic_score_gemma":0.0002018041,"domain_scores_codex":[0.9977994,0.0002671311,0.0004258542,0.0008293344,0.000129173,0.0005491003],"domain_scores_gemma":[0.9990084,0.00006211533,0.000106335,0.0003611266,0.0002119237,0.0002501486],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005058841,0.00005092543,0.00370135,0.00006034544,0.00001922672,0.00001968976,0.0002365614,0.00009948166,0.9721228,0.0001380067,0.002057134,0.01643559],"study_design_scores_gemma":[0.01955628,0.01827234,0.02150702,0.0002560036,0.00003869045,0.0002662553,0.00113068,0.00548417,0.5901991,0.004103767,0.3363484,0.002837321],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943616,0.0006390092,0.001789013,0.001402953,0.0001416438,0.001355921,0.0001123399,0.00003797004,0.0001595981],"genre_scores_gemma":[0.990827,0.0001211146,0.005614043,0.001174571,0.0007688521,0.0003454111,0.001032019,0.00003840322,0.00007861269],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3819238,"threshold_uncertainty_score":0.9637887,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1401353577050172,"score_gpt":0.3556923809167757,"score_spread":0.2155570232117585,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}