{"id":"W3092287221","doi":"10.3390/microorganisms8101561","title":"Population Genomic Analysis of Mycoplasma bovis Elucidates Geographical Variations and Genes associated with Host-Types","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"South Dakota Governor's Office of Economic Development; South Dakota State University; U.S. Department of Agriculture","keywords":"Biology; Clade; Phylogenetic tree; Genome; Population; Herd; Phylogenetics; Mycobacterium bovis; Genetics; Zoology; Gene; Ecology; Tuberculosis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002012811,0.0001450321,0.0002589579,0.0007406679,0.0002413846,0.000360204,0.0001399186,0.0002395391,0.0005537886],"category_scores_gemma":[0.0004990586,0.0000988461,0.0002372366,0.0009855091,0.0001533034,0.0001280413,0.0002216407,0.0002983522,0.0001691959],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002237811,"about_ca_system_score_gemma":0.0002327894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005838093,"about_ca_topic_score_gemma":0.008735126,"domain_scores_codex":[0.9998424,0.00001823559,0.000008401496,0.0000713718,0.00002698628,0.00003270988],"domain_scores_gemma":[0.9997371,0.00006719254,0.00009641048,0.00001937816,0.00004485539,0.00003508971],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003664728,0.00009491036,0.6527856,0.0001565927,0.0002360273,0.0002073314,0.0009770961,0.0006949605,0.3200262,0.0001936888,0.0003510985,0.02391008],"study_design_scores_gemma":[0.000002780224,0.00005535312,0.9966215,0.000009429015,0.00002942012,0.0001303485,0.0001913326,0.0006437915,0.001516415,0.00004742873,0.0007480572,0.000004256334],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984785,0.0002229444,0.0003807963,0.00001445328,0.000001381068,0.000003812232,0.000691415,0.000007846669,0.0001989474],"genre_scores_gemma":[0.9951669,0.00017037,0.001145664,0.00003026727,0.00000369132,0.000006018491,0.003334626,0.000006627592,0.0001358165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005838093,"threshold_uncertainty_score":0.01160824,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00978999655394314,"score_gpt":0.2243199534234259,"score_spread":0.2145299568694828,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}