{"id":"W3092287221","doi":"10.3390/microorganisms8101561","title":"Population Genomic Analysis of Mycoplasma bovis Elucidates Geographical Variations and Genes associated with Host-Types","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"South Dakota Governor's Office of Economic Development; South Dakota State University; U.S. Department of Agriculture","keywords":"Biology; Clade; Phylogenetic tree; Genome; Population; Herd; Phylogenetics; Mycobacterium bovis; Genetics; Zoology; Gene; Ecology; Tuberculosis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001137598,0.0001328946,0.0003372639,0.0002746687,0.0002040111,0.0000305344,0.00009176265,0.000159437,0.0009072999],"category_scores_gemma":[0.00007234111,0.0001146131,0.00009331835,0.001007478,0.0001408171,0.00006187168,0.00007376732,0.0001337185,0.00003815477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002206962,"about_ca_system_score_gemma":0.00004240633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006023002,"about_ca_topic_score_gemma":0.0003092201,"domain_scores_codex":[0.9990971,0.0001360509,0.000237277,0.0002823018,0.00003461435,0.0002126582],"domain_scores_gemma":[0.9994797,0.0001023432,0.0001117401,0.0001391568,0.0001162016,0.00005088528],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005920443,0.00008828224,0.153229,0.000009361229,0.001813906,0.000001140705,0.0002076858,0.00005154634,0.84396,0.0003198792,0.00009201537,0.0001679915],"study_design_scores_gemma":[0.001250298,0.0003552235,0.7438726,0.00001531534,0.00244755,0.00001521581,0.0001283764,0.0002533271,0.2505655,0.000043565,0.000741857,0.0003112256],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971653,0.001153819,0.0007557781,0.0003282407,0.000031395,0.0001545091,0.0003227307,0.00005550601,0.00003275948],"genre_scores_gemma":[0.9986426,0.000107206,0.0001187552,0.0001084133,0.00001083395,0.000005046486,0.0009335901,0.00001522206,0.00005837413],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5933946,"threshold_uncertainty_score":0.9934298,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00978999655394314,"score_gpt":0.2243199534234259,"score_spread":0.2145299568694828,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}