{"id":"W3092337894","doi":"10.1101/2020.10.07.330092","title":"Transcribed germline-limited coding sequences in <i>Oxytricha trifallax</i>","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Princeton University; National Institutes of Health; National Science Foundation","keywords":"Germline; Biology; ORFS; Macronucleus; Genetics; Genome; Somatic cell; Gene; Transcription (linguistics); Open reading frame","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004019269,0.0001892374,0.0001353888,0.0003537894,0.0001469609,0.000179668,0.0001486778,0.0001968641,0.000605871],"category_scores_gemma":[0.0001322707,0.00009547015,0.0001975482,0.0002368368,0.0001478475,0.00009382612,0.0001608423,0.0002741599,0.0003496062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002399349,"about_ca_system_score_gemma":0.0001320665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001527713,"about_ca_topic_score_gemma":0.002020228,"domain_scores_codex":[0.9999397,0.00000388447,0.000006558173,0.00002194132,0.00001356006,0.00001430524],"domain_scores_gemma":[0.9998026,0.00003597693,0.00008649525,0.00001877652,0.00002783414,0.0000282423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003631396,0.000003748619,0.000648036,0.00001847533,0.000001236508,0.00004940828,0.00002485141,0.00002018539,0.9984548,0.00002470745,0.00001870811,0.0006995639],"study_design_scores_gemma":[0.0000196492,0.0003412456,0.16656,0.00003722961,0.0000566184,0.001306278,0.0003802461,0.001053034,0.820478,0.00009990143,0.009642905,0.00002491681],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946799,0.0002927259,0.001736314,0.00005122272,0.000008244293,0.00001389199,0.002387822,0.00005702842,0.0007728008],"genre_scores_gemma":[0.9846274,0.0001768066,0.002860866,0.00007686119,0.000007386761,0.0000398575,0.01034348,0.00006352952,0.001803891],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001527713,"threshold_uncertainty_score":0.003037691,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02026817021366509,"score_gpt":0.2200220422970357,"score_spread":0.1997538720833706,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}