{"id":"W3092384753","doi":"10.1016/j.cub.2020.08.081","title":"The Recovery, Interpretation and Use of Ancient Pathogen Genomes","year":2020,"lang":"en","type":"review","venue":"Current Biology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Interpretation (philosophy); Genome; Evolutionary biology; Computational biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001985408,0.001337591,0.002206653,0.002335485,0.0003265267,0.002057005,0.001469124,0.002159173,0.002385584],"category_scores_gemma":[0.002358039,0.0005033881,0.0005752207,0.002469937,0.001357024,0.002339401,0.00114108,0.002529992,0.00172035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009676292,"about_ca_system_score_gemma":0.001814141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001383009,"about_ca_topic_score_gemma":0.001597666,"domain_scores_codex":[0.9996225,0.0000712581,0.00003542973,0.0001122039,0.0001182969,0.00004034935],"domain_scores_gemma":[0.9985518,0.0009181516,0.0001239132,0.00007927282,0.0002543596,0.0000724492],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001481217,0.00004844783,0.0003291232,0.01785697,0.0001025939,0.0001668918,0.00007240409,0.0006512812,0.009616458,0.007942818,0.01447795,0.948587],"study_design_scores_gemma":[0.00002283381,0.00009082382,0.001073886,0.002822948,0.0001837316,0.0008804995,0.0000784095,0.0002367272,0.003668971,0.005029347,0.9858685,0.00004332506],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000173367,0.9978122,0.0008990745,0.0002969471,0.0002172263,0.000005972848,0.00004609928,0.00001457801,0.0005346049],"genre_scores_gemma":[0.0009162273,0.9972461,0.00104078,0.0002028266,0.0001819758,0.000008017564,0.0001040039,0.000003880103,0.000296251],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002385584,"threshold_uncertainty_score":0.01049995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06464556551793399,"score_gpt":0.3730925341163999,"score_spread":0.3084469685984659,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}