{"id":"W3092539106","doi":"10.3390/pathogens9100829","title":"Genomic Diversity and Hotspot Mutations in 30,983 SARS-CoV-2 Genomes: Moving Toward a Universal Vaccine for the “Confined Virus”?","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Cancer Research","keywords":"Biology; Genome; Genetics; Mutation rate; Virology; Virus; Mutation; Viral quasispecies; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002833388,0.0001991191,0.0003066097,0.001019599,0.0002410565,0.0003630624,0.0001466041,0.0002961976,0.0004432424],"category_scores_gemma":[0.0004199633,0.0001183712,0.0004114833,0.001221686,0.0002385974,0.0002368558,0.0002396496,0.0001708715,0.0001438393],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001814136,"about_ca_system_score_gemma":0.0001889186,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00162892,"about_ca_topic_score_gemma":0.002957766,"domain_scores_codex":[0.9997417,0.00003852995,0.00003080799,0.00008694582,0.0000556136,0.00004630283],"domain_scores_gemma":[0.9997553,0.00005005337,0.00009785331,0.00002893245,0.00002995643,0.00003788553],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007310545,0.00006802195,0.8187069,0.000145712,0.0002779962,0.001067343,0.0007742993,0.0008299353,0.1585344,0.0001990164,0.0002328067,0.01843254],"study_design_scores_gemma":[0.000006195686,0.00005918005,0.9952412,0.00001005941,0.00004814791,0.00097917,0.0002725384,0.0005422704,0.001888556,0.00005580358,0.0008898829,0.00000699944],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992156,0.0002185115,0.00009639328,0.00001002822,0.000001137204,0.00000264315,0.0003497475,0.000002411925,0.0001035522],"genre_scores_gemma":[0.9976771,0.0001677204,0.0003558326,0.00001932623,0.000003854548,0.000004399418,0.001707549,0.000003410244,0.00006093502],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00162892,"threshold_uncertainty_score":0.003238916,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07842071175066809,"score_gpt":0.3170173868643675,"score_spread":0.2385966751136994,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}