{"id":"W3092539106","doi":"10.3390/pathogens9100829","title":"Genomic Diversity and Hotspot Mutations in 30,983 SARS-CoV-2 Genomes: Moving Toward a Universal Vaccine for the “Confined Virus”?","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Cancer Research","keywords":"Biology; Genome; Genetics; Mutation rate; Virology; Virus; Mutation; Viral quasispecies; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002841309,0.0001727164,0.0002981057,0.0001415028,0.0003654195,0.00003226061,0.0002494466,0.00008630463,0.00002046073],"category_scores_gemma":[0.0002432124,0.0001406207,0.0001140723,0.0003532935,0.00006980746,0.00006619293,0.0004926936,0.0002363728,0.0000325341],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001344419,"about_ca_system_score_gemma":0.0001692775,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004618573,"about_ca_topic_score_gemma":0.0001823405,"domain_scores_codex":[0.9987529,0.00005186402,0.0002091571,0.0003853415,0.0002380103,0.0003627558],"domain_scores_gemma":[0.9992568,0.0003104373,0.00005526384,0.0002233965,0.00009345391,0.00006057544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007504524,0.00008679791,0.1642155,0.0001473213,0.0001336865,0.0002140455,0.011488,0.000005924421,0.8185476,0.0001453719,0.0002058653,0.004059358],"study_design_scores_gemma":[0.02158923,0.001732899,0.5987449,0.0001249027,0.001106676,0.0001025401,0.01257476,0.04159144,0.1706431,0.0006750519,0.1499958,0.001118628],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993179,0.0008289163,0.001801233,0.002797115,0.0000459534,0.0009273638,0.0001218492,0.00005752454,0.0002410668],"genre_scores_gemma":[0.9789873,0.00005124824,0.0003081254,0.02043172,0.0001459131,0.00003089897,0.000008985898,0.00002538228,0.00001043767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6479045,"threshold_uncertainty_score":0.5734344,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07842071175066809,"score_gpt":0.3170173868643675,"score_spread":0.2385966751136994,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}