{"id":"W3092583924","doi":"10.1016/s2666-5247(20)30145-2","title":"Mycobacterium orygis: a zoonosis, zooanthroponosis, or both? – Authors' reply","year":2020,"lang":"en","type":"letter","venue":"The Lancet Microbe","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; Bill and Melinda Gates Foundation","keywords":"Zoonosis; Transmission (telecommunications); Mycobacterium bovis; Tuberculosis; Biology; Mycobacterium tuberculosis complex; Livestock; Wildlife; Mycobacterium tuberculosis; Zoology; Geography; Virology; Ecology; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0009343345,0.0007519619,0.002442887,0.0001780205,0.0002924179,0.0001124968,0.001172839,0.0009508727,0.003022145],"category_scores_gemma":[0.001661445,0.0004261044,0.0005475408,0.0004631317,0.0007061978,0.00007946303,0.0006396166,0.006109874,0.002328492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002644791,"about_ca_system_score_gemma":0.0005470199,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006223306,"about_ca_topic_score_gemma":0.00004987567,"domain_scores_codex":[0.9945447,0.00107154,0.0008847656,0.001176897,0.0004949411,0.001827187],"domain_scores_gemma":[0.996111,0.0008631315,0.0003774698,0.002151825,0.0001468721,0.0003497548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001110667,0.00004997331,0.001051256,0.0009078999,0.0007206184,0.002081737,0.0002084858,1.969279e-7,0.004503268,0.00001421331,0.9888298,0.0005218734],"study_design_scores_gemma":[0.001315119,0.0005644104,0.001240368,0.0004945009,0.0004408896,0.0008935714,0.00004488755,0.00002974697,0.0006356863,0.00009993866,0.9937493,0.000491556],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.0007480503,0.00265928,0.00005182706,0.9909317,0.001136636,0.001203494,0.0004358746,0.0004016898,0.00243148],"genre_scores_gemma":[0.0004912302,0.006301894,0.0009914174,0.9473884,0.03054359,0.0002146952,0.001145052,0.0001924697,0.01273126],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.04354327,"threshold_uncertainty_score":0.9998191,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07263244986565028,"score_gpt":0.3451124895976301,"score_spread":0.2724800397319798,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}