{"id":"W3092703056","doi":"10.1016/j.celrep.2020.108259","title":"Defending against the Type Six Secretion System: beyond Immunity Genes","year":2020,"lang":"en","type":"review","venue":"Cell Reports","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Secretion; Immunity; Gene; Biology; Immune system; Immunology; Genetics; Endocrinology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004827022,0.0003698146,0.0007599971,0.00004446393,0.0002729388,0.00007866895,0.0003036808,0.0002992298,0.000009596543],"category_scores_gemma":[0.0002650126,0.0002470206,0.0003810064,0.0002012814,0.0001004584,0.000002756429,0.0006626961,0.0003191841,0.00003613615],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009056009,"about_ca_system_score_gemma":0.0004260432,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001377826,"about_ca_topic_score_gemma":0.000005789656,"domain_scores_codex":[0.9979841,0.0003269291,0.0005807593,0.000546258,0.0002373506,0.0003246177],"domain_scores_gemma":[0.9982466,0.00003684065,0.0005572877,0.0009148744,0.0001395683,0.0001048558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004681991,0.00009973083,0.0001368662,0.0592651,0.001719613,0.002616276,0.0001559971,0.000007831502,0.07736985,0.00002818639,0.01886095,0.8396928],"study_design_scores_gemma":[0.00003451379,0.00007309434,0.000004975526,0.0008368989,0.000227875,0.0002603644,0.00006785271,0.000001685438,0.0008463243,0.000001404218,0.9973966,0.0002484031],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001267598,0.9893254,0.0000159931,0.00001334025,0.0007885573,0.0007085535,0.00001847603,0.00003084129,0.007831246],"genre_scores_gemma":[0.003571533,0.9936668,0.00004527058,0.00002042015,0.0006720586,0.00009011263,0.001130182,0.00006722,0.0007363492],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9785357,"threshold_uncertainty_score":0.9999982,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03092507137280145,"score_gpt":0.3014021660487515,"score_spread":0.27047709467595,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}