{"id":"W3093095246","doi":"10.1128/jvi.01414-20","title":"A Newly Identified Virus in the Family <i>Potyviridae</i> Encodes Two Leader Cysteine Proteases in Tandem That Evolved Contrasting RNA Silencing Suppression Functions","year":2020,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Central Public-interest Scientific Institution Basal Research Fund for Chinese Academy of Tropical Agricultural Sciences; Chinese Academy of Tropical Agricultural Sciences; Chinese Academy of Agricultural Sciences; Academia Sinica; Agricultural Biotechnology Research Center, Academia Sinica; National Natural Science Foundation of China","keywords":"Biology; Proteases; RNA silencing; Potyviridae; Genetics; Gene silencing; RNA interference; RNA-induced silencing complex; RNA; Cysteine protease; Virology; Virus; Potyvirus; Cell biology; Gene; Plant virus; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009432003,0.0001475813,0.0003771241,0.00004741872,0.0001826019,0.00006216437,0.000407257,0.00008210655,0.00003228171],"category_scores_gemma":[0.0007762878,0.00005075599,0.0001060635,0.0003875007,0.0001148718,0.0002678662,0.000101674,0.0006235968,0.000008670931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003780612,"about_ca_system_score_gemma":0.00003011533,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005230184,"about_ca_topic_score_gemma":0.002060273,"domain_scores_codex":[0.9979128,0.0006041141,0.0004957004,0.0001987399,0.0004068901,0.0003817696],"domain_scores_gemma":[0.9983432,0.001154783,0.0002950975,0.00003917294,0.00007526544,0.00009252474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002548353,0.00008307354,0.01097029,0.000005935721,0.00001977147,0.0001926436,0.0005752222,0.0002492433,0.9833941,0.000002980076,0.002040653,0.002211227],"study_design_scores_gemma":[0.004509516,0.003731978,0.8658354,0.0004507514,0.00008618122,0.0003356593,0.02126639,0.003985447,0.09295502,0.0005489941,0.005773087,0.0005215413],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904197,0.00155977,0.00004381463,0.007413898,0.000106466,0.0002761677,0.00003132543,0.00001140567,0.0001374574],"genre_scores_gemma":[0.9977005,0.0002817771,0.00003375783,0.001585503,0.0003607601,0.00001724442,0.000004967518,0.000001254912,0.00001427619],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8904391,"threshold_uncertainty_score":0.2709253,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08555747357270646,"score_gpt":0.28250989864285,"score_spread":0.1969524250701436,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}