{"id":"W3093104105","doi":"10.17504/protocols.io.bjgkkjuw","title":"SARS-CoV-2 McGill Artic PCR Protocol, 2.5 ul RT and V3 only + LA1 v1","year":2020,"lang":"en","type":"preprint","venue":"","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre","funders":"","keywords":"Primer (cosmetics); Amplicon; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Protocol (science); Coronavirus disease 2019 (COVID-19); Computer science; 2019-20 coronavirus outbreak; Computational biology; Virology; Biology; Polymerase chain reaction; Medicine; Chemistry; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000259336,0.000461674,0.000724508,0.0001904393,0.0001315455,0.00007705699,0.0001546045,0.0003951761,0.00007220617],"category_scores_gemma":[0.0007359923,0.0003960651,0.0001894799,0.0002457688,0.00009722757,0.00006497477,0.0005499758,0.001172511,0.0003993718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001172166,"about_ca_system_score_gemma":0.0002530457,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003970561,"about_ca_topic_score_gemma":0.0001398947,"domain_scores_codex":[0.9976029,0.00007480316,0.0006125466,0.0009122112,0.0004051079,0.0003924757],"domain_scores_gemma":[0.9987395,0.0001153012,0.0002307548,0.0006037522,0.000177062,0.0001336175],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006472693,0.0004316384,0.004824809,0.003614992,0.0004256595,0.0006017088,0.0003245199,0.000002166821,0.9439003,0.001027198,0.01368504,0.03051466],"study_design_scores_gemma":[0.002709074,0.0004670629,0.001708515,0.000734227,0.0002015454,0.0005661714,0.00006740691,0.002406697,0.8231688,0.001750381,0.1656536,0.0005664412],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7471455,0.00006688661,0.0007608686,0.005026977,0.0007866234,0.116738,0.00005106746,0.003402828,0.1260212],"genre_scores_gemma":[0.8935209,0.000009613446,0.0124698,0.03796972,0.001034832,0.05304515,0.00003150718,0.0003567218,0.001561764],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1519686,"threshold_uncertainty_score":0.9998491,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1093175077299961,"score_gpt":0.3588243167782268,"score_spread":0.2495068090482307,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}