{"id":"W3093121240","doi":"10.1186/s12881-020-01115-w","title":"Associations of NOD2 polymorphisms with Erysipelotrichaceae in stool of in healthy first degree relatives of Crohn’s disease subjects","year":2020,"lang":"en","type":"article","venue":"BMC Medical Genetics","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hôpital Maisonneuve-Rosemont; University of Alberta; University of Calgary; McMaster University; Sinai Health System; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; Hospital for Sick Children; Public Health Ontario; University of Toronto","funders":"Institute of Nutrition, Metabolism and Diabetes; Canada Research Chairs; Canadian Association of Gastroenterology; Crohn's and Colitis Canada; Biocodex Microbiota Foundation; Canadian Institutes of Health Research; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"NOD2; Microbiome; Biology; Crohn's disease; Inflammatory bowel disease; Immunology; Genetics; Disease; Single-nucleotide polymorphism; Genotype; Gene; Immune system; Internal medicine; Medicine; Innate immune system","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002223987,0.0001141113,0.000323203,0.00007276795,0.00001725566,0.000001499769,0.000181943,0.0001735752,0.00002476052],"category_scores_gemma":[0.0005981417,0.0001032897,0.00005666553,0.0003172964,0.0001614683,0.000001976961,0.00008029544,0.0001356848,8.933549e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002095404,"about_ca_system_score_gemma":0.001230684,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001294596,"about_ca_topic_score_gemma":0.00253857,"domain_scores_codex":[0.9986058,0.0001275209,0.0005434605,0.0002343004,0.0002750003,0.0002139098],"domain_scores_gemma":[0.9991091,0.00009709069,0.0002605017,0.0001953331,0.00008025679,0.0002577169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008661823,0.0004121757,0.9668749,0.0005019339,0.00002641204,0.00001118423,0.0007079584,0.0003333081,0.02961656,0.00007023283,0.0001850876,0.0003940648],"study_design_scores_gemma":[0.001649606,0.0005488622,0.991705,0.0001085699,0.00001637958,8.827055e-7,0.0000826082,0.0003331561,0.005360061,0.00001429705,0.00008079642,0.0000997643],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954875,0.002363051,0.001001389,0.0006896738,0.00002742129,0.0002571971,0.000105733,0.000002658999,0.0000653809],"genre_scores_gemma":[0.9970161,0.0007365436,0.001847215,0.0002546648,0.00004244486,0.000006253064,0.00006628103,0.00001485391,0.00001569003],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02483011,"threshold_uncertainty_score":0.421203,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04000012695744246,"score_gpt":0.2846364023111075,"score_spread":0.244636275353665,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}