{"id":"W3093201963","doi":"10.3390/pathogens9100836","title":"Effects of Naturally Occurring Mutations in Bovine Leukemia Virus 5′-LTR and Tax Gene on Viral Transcriptional Activity","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Winnipeg; University of Manitoba","funders":"","keywords":"Bovine leukemia virus; Long terminal repeat; Transactivation; Biology; Gene; Luciferase; Promoter; Reporter gene; Transcription (linguistics); Virology; Leucosis; Plasmid; Molecular biology; Genetics; Virus; Gene expression; Transfection","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000046507,0.0001270843,0.00023028,0.00005828508,0.00009840935,0.000003483192,0.00006342099,0.0001146146,0.00002018319],"category_scores_gemma":[0.00007115499,0.0001078593,0.00006305789,0.00009013812,0.0001279601,0.00003995795,0.00003606395,0.0002441687,0.00002613622],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003418718,"about_ca_system_score_gemma":0.00003309136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009272194,"about_ca_topic_score_gemma":0.0000739949,"domain_scores_codex":[0.9993356,0.00009473031,0.0001423998,0.0002155924,0.00003143385,0.0001802827],"domain_scores_gemma":[0.9997172,0.000129893,0.00005424731,0.00005762417,0.00002037038,0.00002060473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000259261,0.00006781345,0.002324571,0.00006530248,0.00006811114,0.00001720214,0.001161032,0.00002975811,0.9933869,0.0001943299,0.000059874,0.002365828],"study_design_scores_gemma":[0.00164201,0.000448097,0.1517527,0.00003027166,0.00005561918,0.00001036348,0.00007738917,0.00004197953,0.8444899,0.00004635276,0.001244961,0.0001602831],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953394,0.003684468,0.00008266677,0.0001478216,0.0002010419,0.0001643717,0.000211159,0.00002473359,0.0001443454],"genre_scores_gemma":[0.9994193,0.000130093,0.00007637127,0.0002285372,0.00002924904,0.0000138097,0.00002302116,0.000007961419,0.00007170403],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1494282,"threshold_uncertainty_score":0.4398376,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01032719424609475,"score_gpt":0.2159473841318937,"score_spread":0.2056201898857989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}