{"id":"W3093605214","doi":"10.1139/gen-2020-0072","title":"Analysis of the core genome and pangenome of <i>Clostridium butyricum</i>","year":2020,"lang":"en","type":"article","venue":"Genome","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Key Laboratory of Industrial Biotechnology; Sichuan University; National Natural Science Foundation of China","keywords":"Clostridium butyricum; Biology; Genome; Genetics; Gene; Comparative genomics; Prophage; Genomics; Bacteria; Bacteriophage","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001253179,0.0004218722,0.0003247558,0.001031577,0.0003696749,0.0002946283,0.0001799144,0.000239808,0.0005775818],"category_scores_gemma":[0.0002705426,0.0001233356,0.0004568066,0.001402314,0.000120979,0.0003529179,0.0005192744,0.0003200465,0.0001483139],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002318981,"about_ca_system_score_gemma":0.0004056273,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00406416,"about_ca_topic_score_gemma":0.003577852,"domain_scores_codex":[0.9998862,0.00000822801,0.000007908191,0.00003612551,0.0000257593,0.00003582234],"domain_scores_gemma":[0.9998218,0.00002000931,0.00004467826,0.0000147051,0.00003842896,0.00006043423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002698076,0.00003628787,0.01150727,0.000213424,0.00002857181,0.0001858147,0.0001802874,0.0001584965,0.9792834,0.00007556756,0.00009368138,0.007967342],"study_design_scores_gemma":[0.00003349916,0.0005595309,0.7989998,0.00007149902,0.0003251878,0.002062655,0.001006714,0.003246064,0.1839635,0.0002939353,0.009385212,0.00005248985],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937012,0.0008905707,0.001667761,0.00006198268,0.00001192377,0.0000271484,0.002892616,0.00003544224,0.0007112797],"genre_scores_gemma":[0.9766234,0.001081766,0.007035168,0.0001180923,0.00001594908,0.00005046651,0.01423809,0.00004644371,0.0007907005],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00406416,"threshold_uncertainty_score":0.008081019,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01660284023817687,"score_gpt":0.2124079770324818,"score_spread":0.1958051367943049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}