{"id":"W3093731430","doi":"10.1016/j.bpj.2021.02.004","title":"EGGTART: A tool to visualize the dynamics of biophysical transport under the inhomogeneous l-TASEP","year":2021,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Stochastic processes and statistical mechanics","field":"Mathematics","cited_by":6,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Asymmetric simple exclusion process; Statistical physics; Computer science; Stochastic process; Realization (probability); Jump; Software; Physics; Mathematics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002625088,0.000222618,0.0004038016,0.00002737035,0.0002640361,0.00006870297,0.0004542538,0.00008124267,0.0001399085],"category_scores_gemma":[0.0004557895,0.0001199336,0.0002978747,0.0004670807,0.0001473796,0.00004616673,0.0000975853,0.0004604597,0.00003290891],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006314829,"about_ca_system_score_gemma":0.0002028488,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000608864,"about_ca_topic_score_gemma":0.00002053426,"domain_scores_codex":[0.9980705,0.000099243,0.0005414942,0.0002353687,0.0006773255,0.0003760061],"domain_scores_gemma":[0.998037,0.0009094752,0.0001708874,0.0004001154,0.000299042,0.0001834177],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.00008638226,0.0004545663,0.000002287912,0.00004814591,0.0001201175,0.0001203535,0.0002332908,0.0000588491,0.03068978,0.9640782,0.0006325385,0.003475526],"study_design_scores_gemma":[0.0008404316,0.0006426718,0.0003874685,0.0001661235,0.0005206364,0.0008656833,0.001270685,0.03127776,0.02422657,0.9385223,0.0007685517,0.000511114],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2856856,0.000023584,0.7091545,0.004189531,0.0003259564,0.000200287,0.0001544692,0.00002418619,0.0002418783],"genre_scores_gemma":[0.9921578,0.00001503128,0.006253256,0.0008274385,0.0005087502,0.00001437093,0.000007305039,0.00003602692,0.0001800772],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7064721,"threshold_uncertainty_score":0.4890751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02833369151692018,"score_gpt":0.3160188703214659,"score_spread":0.2876851788045457,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}