{"id":"W3093748290","doi":"10.1094/phyto-08-20-0348-fi","title":"Genomic Profiling of Virulence in the Soybean Cyst Nematode Using Single-Nematode Sequencing","year":2020,"lang":"en","type":"article","venue":"Phytopathology","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Université Laval; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Government of Canada; Génome Québec; Genome Canada","keywords":"Biology; Virulence; Soybean cyst nematode; Transcriptome; Genetics; Effector; Gene; Nematode; Gene expression profiling; Phenotype; Gene expression; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001753012,0.0002148949,0.0003773292,0.0003570038,0.0001749566,0.0003214715,0.0001474447,0.0002684322,0.0005775487],"category_scores_gemma":[0.0002540166,0.0001513764,0.0003740587,0.0003418224,0.0001297992,0.0001646029,0.0002214217,0.0003976788,0.0003597766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001897531,"about_ca_system_score_gemma":0.0002350659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001160535,"about_ca_topic_score_gemma":0.003069036,"domain_scores_codex":[0.9998816,0.000007726598,0.000005016414,0.00005300939,0.00003520393,0.00001745202],"domain_scores_gemma":[0.9998542,0.00003463675,0.00004031162,0.00001289885,0.0000329787,0.00002497874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004437572,0.000008302118,0.001901015,0.00005633807,0.000009632811,0.00003030617,0.00004213414,0.0001313818,0.9955786,0.00002683614,0.0000373494,0.002133825],"study_design_scores_gemma":[0.00003150451,0.0006250759,0.5653296,0.00006022477,0.0002143643,0.001018892,0.0004880535,0.01055519,0.4102859,0.0004750807,0.01086642,0.00004967073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9805189,0.0008131813,0.009533416,0.00006770482,0.00001739464,0.00004279457,0.007827564,0.0001204445,0.001058509],"genre_scores_gemma":[0.9459174,0.001059642,0.02485231,0.0001783409,0.00001795531,0.0001169416,0.02499967,0.0001495416,0.002708181],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001160535,"threshold_uncertainty_score":0.002307594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09768959167209411,"score_gpt":0.2493970364674203,"score_spread":0.1517074447953262,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}