{"id":"W3093919792","doi":"10.1038/s41467-020-19185-y","title":"The seventh pandemic of cholera in Europe revisited by microbial genomics","year":2020,"lang":"en","type":"article","venue":"Nature Communications","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii; Agence Nationale de la Recherche; Fondation Le Roch-Les Mousquetaires; Infrastructures en Biologie Santé et Agronomie","keywords":"Cholera; Outbreak; Pandemic; Geography; Vibrio cholerae; El Tor; Middle East; Coronavirus disease 2019 (COVID-19); Socioeconomics; Infectious disease (medical specialty); Biology; Disease; Virology; Medicine; Archaeology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000966437,0.0002101558,0.0003516446,0.0006195504,0.0003345244,0.0009365741,0.0001513948,0.0005086702,0.0004533717],"category_scores_gemma":[0.0006353038,0.00008986091,0.0003432344,0.001085894,0.0007224951,0.0008920659,0.0007449708,0.0007971654,0.0000970843],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005608519,"about_ca_system_score_gemma":0.000760414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004509499,"about_ca_topic_score_gemma":0.003804391,"domain_scores_codex":[0.9997669,0.00007738694,0.000009928424,0.00004840304,0.0000306518,0.00006676047],"domain_scores_gemma":[0.9998037,0.0000431652,0.00005257813,0.00001885403,0.00003361914,0.00004807689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.001470039,0.0001447734,0.3678802,0.0009282383,0.0005674012,0.005320216,0.01361639,0.006576577,0.1187549,0.04689773,0.0125944,0.4252492],"study_design_scores_gemma":[0.00005833516,0.0004072922,0.8186623,0.0007893062,0.0001636412,0.003506629,0.01665832,0.002334496,0.006015071,0.02824308,0.1230668,0.00009482828],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9514086,0.02345816,0.004152798,0.01088038,0.000216201,0.00001219377,0.0004704904,0.00003998806,0.009361229],"genre_scores_gemma":[0.9776549,0.01620612,0.002967708,0.001896896,0.0001363694,0.000007625998,0.0003768945,0.00001677013,0.0007366893],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004509499,"threshold_uncertainty_score":0.008966506,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01949241847130342,"score_gpt":0.3026090014577334,"score_spread":0.28311658298643,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}