{"id":"W3094256130","doi":"10.1101/2020.10.22.20215988","title":"Microbiota compositions from infertile couples seeking <i>in vitro</i> fertilization (IVF), using 16S rRNA gene sequencing methods: any correlation to clinical outcomes?","year":2020,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Genomics","funders":"","keywords":"Gardnerella vaginalis; Biology; Lactobacillus; Lactobacillus gasseri; Lactobacillus crispatus; Microbiology; Bacteroidetes; Semen; Prevotella; Ruminococcus; Firmicutes; Ureaplasma; Andrology; Bacterial vaginosis; Medicine; 16S ribosomal RNA; Bacteria; Mycoplasma; Feces; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004185921,0.000182586,0.0002778606,0.0006391881,0.0004056855,0.0004522939,0.0001136115,0.0003194036,0.0009600176],"category_scores_gemma":[0.001025187,0.0001281109,0.0002170019,0.0005129955,0.0002324715,0.0001985102,0.0002908025,0.0001958664,0.0001202134],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001275127,"about_ca_system_score_gemma":0.0001527662,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001358485,"about_ca_topic_score_gemma":0.002009365,"domain_scores_codex":[0.9997281,0.00009964783,0.00003320025,0.00004612089,0.00005339688,0.00003948071],"domain_scores_gemma":[0.999657,0.00007594138,0.0001415669,0.00001472975,0.0000420806,0.00006870141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001774365,0.00004034659,0.9842001,0.00006256468,0.00004471518,0.0001954364,0.0005670581,0.00003137177,0.006583176,0.00001779592,0.00007342732,0.008006587],"study_design_scores_gemma":[0.00000407107,0.0003323075,0.9964979,0.00002779372,0.0000439822,0.0007536403,0.0009276778,0.0001192779,0.0009262082,0.000035766,0.0003243686,0.000007011661],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987614,0.0007783365,0.0001204309,0.00004888685,0.000005667629,0.000006917659,0.0000979662,0.000001663551,0.0001786819],"genre_scores_gemma":[0.9991851,0.0003440683,0.0002114772,0.00005776203,0.000009767181,0.000006268582,0.0001172056,0.000001004588,0.00006727853],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001358485,"threshold_uncertainty_score":0.003211617,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1454084479268652,"score_gpt":0.426789590031062,"score_spread":0.2813811421041967,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}