{"id":"W3094500406","doi":"10.1139/gen-2020-0092","title":"Sequence of <i>Trypanosoma cruzi</i> reference strain SC43 nuclear genome and kinetoplast maxicircle confirms a strong genetic structure among closely related parasite discrete typing units","year":2020,"lang":"en","type":"article","venue":"Genome","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","keywords":"Biology; Genome; Genetics; Kinetoplast; Synteny; Typing; Contig; Whole genome sequencing; Chagas disease; Comparative genomics; Trypanosoma cruzi; Strain (injury); Virology; Genomics; Parasite hosting; Gene; DNA","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001305473,0.0002668063,0.0002166715,0.000798521,0.0003925322,0.0003271212,0.0001874993,0.0002804951,0.001926762],"category_scores_gemma":[0.0005315626,0.00009527372,0.0003646683,0.001529343,0.0001992031,0.0001670889,0.0002728111,0.0004175852,0.0007312256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002717281,"about_ca_system_score_gemma":0.0003675253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004133552,"about_ca_topic_score_gemma":0.006320492,"domain_scores_codex":[0.9998504,0.00001522591,0.00001251263,0.00005832758,0.00003761874,0.00002587829],"domain_scores_gemma":[0.9995395,0.0001012889,0.0001261454,0.00007678548,0.00008134245,0.00007486724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004211784,0.00004016506,0.01347471,0.000316749,0.00002852397,0.0003574351,0.0004915721,0.0001838078,0.9672754,0.0003087044,0.0003711978,0.01673057],"study_design_scores_gemma":[0.00005998776,0.001100361,0.6567266,0.0002056389,0.0002358908,0.004981268,0.001421879,0.002111057,0.2594922,0.0005023107,0.07308809,0.00007476535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9745062,0.001216276,0.006119714,0.0001030811,0.00003440731,0.00005137735,0.01411705,0.000140906,0.003711058],"genre_scores_gemma":[0.9040996,0.000748548,0.01104865,0.0001293986,0.00001890934,0.00006113279,0.08174139,0.0001176349,0.002034703],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004133552,"threshold_uncertainty_score":0.008219004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04315476878488782,"score_gpt":0.2746124589554059,"score_spread":0.231457690170518,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}