{"id":"W3095475495","doi":"10.1099/ijsem.0.004475","title":"Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species","year":2020,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":515,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Clade; Phylogenomics; Phylogenetic tree; Monophyly; Phylogenetics; Bacillus (shape); Evolutionary biology; Zoology; Botany; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000361281,0.0004007067,0.0003373228,0.0008294793,0.0003548906,0.0006436124,0.0002261336,0.0003359802,0.0006318195],"category_scores_gemma":[0.0005978671,0.0002119577,0.0003533231,0.0005716035,0.0002997646,0.0003560022,0.0006305697,0.0006077685,0.0003421272],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001948206,"about_ca_system_score_gemma":0.0004920855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007409277,"about_ca_topic_score_gemma":0.001209633,"domain_scores_codex":[0.9998106,0.00002538934,0.0000224535,0.0000668508,0.00003996921,0.00003483395],"domain_scores_gemma":[0.9996675,0.00005448377,0.0001010858,0.0000417856,0.00006068333,0.00007452236],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005265356,0.00008490471,0.06721414,0.0004178088,0.00006471363,0.000486974,0.0006858585,0.0005837322,0.8804429,0.0005665804,0.0002709258,0.04865488],"study_design_scores_gemma":[0.00008412365,0.0006383641,0.8402297,0.0002618374,0.0002553138,0.004056802,0.001495174,0.009811735,0.1187977,0.001687315,0.02260656,0.00007534721],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898176,0.001662885,0.00585266,0.00008754229,0.00002700709,0.00006177041,0.0007963045,0.000132003,0.001562267],"genre_scores_gemma":[0.9713607,0.0008450517,0.02146895,0.00011675,0.00001584755,0.00007270452,0.005163902,0.00004085112,0.00091508],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008294793,"threshold_uncertainty_score":0.00211364,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08682491615456048,"score_gpt":0.2746243076221522,"score_spread":0.1877993914675917,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}