{"id":"W3096050955","doi":"10.1101/gr.267328.120","title":"Global regulatory features of alternative splicing across tissues and within the nervous system of <i>C. elegans</i>","year":2020,"lang":"en","type":"article","venue":"Genome Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canada Research Chairs; Canada First Research Excellence Fund; University of Toronto; Compute Canada","keywords":"Biology; Alternative splicing; RNA splicing; Exon; Caenorhabditis elegans; Intron; Genetics; Caenorhabditis; Exon skipping; Gene; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007085131,0.0001840209,0.0001702134,0.0004633854,0.0002382953,0.0003146296,0.0001935622,0.0001870176,0.0009155929],"category_scores_gemma":[0.0001380952,0.0001854894,0.0002105628,0.0001560079,0.0002105158,0.0001324874,0.0001836094,0.0002727297,0.0002546184],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002709655,"about_ca_system_score_gemma":0.000167681,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002705147,"about_ca_topic_score_gemma":0.007174793,"domain_scores_codex":[0.9998866,0.000003581308,0.00000766933,0.00006096203,0.00002497345,0.00001620986],"domain_scores_gemma":[0.999828,0.00003158706,0.00006408021,0.00001133413,0.00002946103,0.00003549302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004878973,0.00001023721,0.003351502,0.00003391904,0.00001038098,0.00006540865,0.00002907905,0.00009397206,0.9944872,0.0000836154,0.00009582732,0.001689898],"study_design_scores_gemma":[0.00001820457,0.0001366634,0.7732751,0.00004377863,0.00006448999,0.0005789085,0.0001325566,0.003104293,0.2176761,0.0001922681,0.004731394,0.00004620458],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963605,0.0003537852,0.0007856077,0.00001824484,0.00000801337,0.000008486808,0.001099818,0.00005234086,0.001313251],"genre_scores_gemma":[0.993669,0.0002322501,0.002320474,0.000075794,0.000006483694,0.00003943652,0.00213805,0.00005557973,0.00146295],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002705147,"threshold_uncertainty_score":0.005378842,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02860153052618383,"score_gpt":0.3439600098088467,"score_spread":0.3153584792826629,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}