{"id":"W3096476086","doi":"10.1017/ice.2020.1156","title":"Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Toronto, Canada","year":2020,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Public Health Ontario; University of Toronto","funders":"","keywords":"Pulsed-field gel electrophoresis; Molecular epidemiology; Epidemiology; SNP; Cluster (spacecraft); Transmission (telecommunications); Single-nucleotide polymorphism; Biology; Population; Genotype; Genetics; Medicine; Internal medicine; Gene; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006822178,0.0001943964,0.000705706,0.0000192052,0.00003790175,0.000002004434,0.0001062245,0.0002000467,0.00003081223],"category_scores_gemma":[0.002775516,0.0001831436,0.00008784993,0.00003735073,0.0001568064,0.000009884802,0.00006936119,0.0001218937,0.000001274007],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009517554,"about_ca_system_score_gemma":0.0001350285,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3869122,"about_ca_topic_score_gemma":0.4736341,"domain_scores_codex":[0.9977723,0.0005577062,0.0007526499,0.0005304281,0.00003334545,0.0003535891],"domain_scores_gemma":[0.998921,0.0003397665,0.0003432738,0.0002118504,0.00005580008,0.0001283491],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001530814,0.00002094863,0.9749411,0.0000441251,0.00006439813,0.000002513244,0.00003366349,0.0002460241,0.02247348,0.0003506232,0.0006506621,0.001019405],"study_design_scores_gemma":[0.0007888947,0.0005158312,0.9939598,0.00001719734,0.00001737451,0.000008368021,0.00003417126,0.0004086526,0.0003616061,0.0001084074,0.003602173,0.0001774536],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990455,0.00415426,0.001577185,0.002947102,0.0004220636,0.000233434,0.00003181954,0.000009488875,0.0001696765],"genre_scores_gemma":[0.9952328,0.001008527,0.0003443343,0.002988991,0.0003332439,0.00001185517,0.0000460203,0.00001527403,0.00001898934],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08672186,"threshold_uncertainty_score":0.7468379,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358330941658405,"score_gpt":0.2608838495853205,"score_spread":0.2473005401687365,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}