{"id":"W3096476086","doi":"10.1017/ice.2020.1156","title":"Genomic Epidemiology of Carbapenemase-Producing Enterobacterales (CPE) in Toronto, Canada","year":2020,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Public Health Ontario; University of Toronto","funders":"","keywords":"Pulsed-field gel electrophoresis; Molecular epidemiology; Epidemiology; SNP; Cluster (spacecraft); Transmission (telecommunications); Single-nucleotide polymorphism; Biology; Population; Genotype; Genetics; Medicine; Internal medicine; Gene; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005082461,0.0003846102,0.0002680994,0.001911742,0.001889399,0.0009809723,0.0009852992,0.0002778492,0.001789345],"category_scores_gemma":[0.002257839,0.0002770577,0.0002707506,0.00277879,0.0008159124,0.0002705328,0.0008760402,0.000306717,0.0001472116],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02460814,"about_ca_system_score_gemma":0.02864001,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.991595,"about_ca_topic_score_gemma":0.9949149,"domain_scores_codex":[0.9988804,0.00009764784,0.00008643648,0.0002012881,0.0004565305,0.0002775766],"domain_scores_gemma":[0.9971645,0.0001431601,0.0005609491,0.00006664266,0.00151403,0.0005505875],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007618672,0.00001749775,0.9891996,0.0000773055,0.00004276215,0.0004516437,0.001395074,0.0003351548,0.001748109,0.0001992333,0.0007308246,0.005726416],"study_design_scores_gemma":[0.000004015121,0.00002666181,0.9970877,0.00003435657,0.00001722171,0.0001925104,0.001203605,0.0003399966,0.0001648714,0.0000147044,0.0009077368,0.000006665472],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926513,0.001347982,0.00038506,0.0003382638,0.00001236162,0.00006168673,0.002813277,0.00001954094,0.002370722],"genre_scores_gemma":[0.9973645,0.0006013568,0.0003487714,0.00008084092,0.000005799424,0.000009831698,0.0009132589,0.000004866532,0.0006707577],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02460814,"threshold_uncertainty_score":0.1785454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358330941658405,"score_gpt":0.2608838495853205,"score_spread":0.2473005401687365,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}