{"id":"W3096938332","doi":"10.1017/ice.2020.542","title":"Whole-Genome Sequencing Reveals a Novel Subclade of Pansusceptible <i>Candida auris</i> in Ontario, Canada","year":2020,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; Health Sciences Centre; Sunnybrook Health Science Centre; Baycrest Hospital; University Health Network; University of Toronto; Markham Stouffville Hospital","funders":"","keywords":"Candida auris; Subclade; Whole genome sequencing; Biology; Clade; Phylogenetic tree; Genome; Microbiology; Genetics; Antifungal; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000223544,0.0004438495,0.0004020529,0.001382004,0.003068509,0.001581754,0.0007284279,0.0005847859,0.001534218],"category_scores_gemma":[0.0007047504,0.0002977276,0.000529691,0.003020214,0.0008380497,0.0001661424,0.0007183203,0.0006750266,0.0003784367],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01542969,"about_ca_system_score_gemma":0.01752561,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9786111,"about_ca_topic_score_gemma":0.9872302,"domain_scores_codex":[0.9992608,0.00001543548,0.00002691326,0.0001657687,0.0002906446,0.0002403085],"domain_scores_gemma":[0.999056,0.00004731869,0.0001334192,0.00003272036,0.0005216588,0.0002088679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001030636,0.0001157294,0.7837465,0.0004624217,0.0002182008,0.01515195,0.008718535,0.00154906,0.1181945,0.001201484,0.01525466,0.05435627],"study_design_scores_gemma":[0.0000298133,0.00006952608,0.9646007,0.000121859,0.00009347928,0.003491106,0.003804551,0.001011019,0.00296873,0.00009865379,0.02366311,0.00004736043],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9676496,0.001734354,0.00136691,0.0009375641,0.00007016134,0.0001843017,0.01595918,0.0001012046,0.01199673],"genre_scores_gemma":[0.98765,0.0009495395,0.001902521,0.0005796044,0.00001720132,0.00003097419,0.006024626,0.00004806788,0.002797526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02138895,"threshold_uncertainty_score":0.1119508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03065739171565883,"score_gpt":0.2602381178722658,"score_spread":0.2295807261566069,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}