{"id":"W3096938332","doi":"10.1017/ice.2020.542","title":"Whole-Genome Sequencing Reveals a Novel Subclade of Pansusceptible <i>Candida auris</i> in Ontario, Canada","year":2020,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; Health Sciences Centre; Sunnybrook Health Science Centre; Baycrest Hospital; University Health Network; University of Toronto; Markham Stouffville Hospital","funders":"","keywords":"Candida auris; Subclade; Whole genome sequencing; Biology; Clade; Phylogenetic tree; Genome; Microbiology; Genetics; Antifungal; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006109817,0.0001751469,0.0009502426,0.00005348454,0.00005148476,0.00000332711,0.00004507957,0.0001595937,0.0000778887],"category_scores_gemma":[0.001391998,0.0001529051,0.0001057962,0.0001471426,0.0001344131,0.0000757192,0.00002272069,0.0004200659,0.000002791664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000435913,"about_ca_system_score_gemma":0.0008542129,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9313362,"about_ca_topic_score_gemma":0.9571469,"domain_scores_codex":[0.9983013,0.0001316188,0.0007206541,0.0003905129,0.0001046633,0.0003512145],"domain_scores_gemma":[0.9988252,0.0004610087,0.0002262756,0.0001553148,0.0001018794,0.0002303544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003096756,0.00004954495,0.9508284,0.00008908012,0.00006095571,0.00001790515,0.0002414986,0.0001399098,0.04730781,0.0002114745,0.0004990206,0.0002447232],"study_design_scores_gemma":[0.002354187,0.0008425702,0.9899771,0.0000518769,0.00005917495,0.00001087721,0.00007670712,0.0004074859,0.00005126011,0.0001850846,0.005841609,0.0001421228],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882751,0.0006931934,0.002140753,0.007622081,0.0001461151,0.0004206146,0.00005111617,0.00002262533,0.0006284582],"genre_scores_gemma":[0.9940448,0.00007165781,0.0001489534,0.005430937,0.0001006402,0.00001956983,0.00002862937,0.00001068758,0.0001441657],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04725655,"threshold_uncertainty_score":0.623529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03065739171565883,"score_gpt":0.2602381178722658,"score_spread":0.2295807261566069,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}