{"id":"W3097267838","doi":"10.1017/ice.2020.726","title":"Development of a New High-Throughput Multilocus Sequence Typing Method to Monitor Causative Agents of Nosocomial Infections","year":2020,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Polytechnique Montréal","funders":"","keywords":"Biology; Multilocus sequence typing; Genome; Phylogenetic tree; Intensive care; Serratia marcescens; Typing; Genetics; Locus (genetics); Computational biology; Genotype; Gene; Medicine; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001893918,0.0006980298,0.0007869742,0.001222323,0.0002843344,0.001059929,0.0007992327,0.0009199989,0.0007701112],"category_scores_gemma":[0.001857197,0.0003500072,0.0007074576,0.0006693495,0.0003177138,0.0008197133,0.0007362784,0.0009659473,0.0008896099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003724775,"about_ca_system_score_gemma":0.0005424385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006780764,"about_ca_topic_score_gemma":0.001039006,"domain_scores_codex":[0.9980965,0.000402814,0.0001219331,0.0005392034,0.0007206251,0.0001188279],"domain_scores_gemma":[0.9988149,0.0003065212,0.0002061345,0.0001149302,0.0004387461,0.0001187863],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000297002,0.000248233,0.02001946,0.0003904792,0.0001196639,0.00009057608,0.0001288017,0.001518353,0.8948799,0.0003840609,0.0008293102,0.08109415],"study_design_scores_gemma":[0.00009972994,0.001476878,0.05806142,0.0001389208,0.000371115,0.0009950787,0.0001920146,0.09015954,0.8239309,0.0008085768,0.02359587,0.0001700472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4061276,0.00453451,0.5777364,0.0007014665,0.0004977585,0.0008044101,0.003942015,0.002185195,0.00347072],"genre_scores_gemma":[0.3725483,0.001541853,0.6170266,0.0004555219,0.0001244489,0.0007086096,0.004509101,0.0001286531,0.002957025],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.001893918,"threshold_uncertainty_score":0.01001614,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04170654309319417,"score_gpt":0.3481466468257539,"score_spread":0.3064401037325597,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}