{"id":"W3097719876","doi":"10.3390/microorganisms8111666","title":"Comparative Genomics Analysis of Vibrio anguillarum Isolated from Lumpfish (Cyclopterus lumpus) in Newfoundland Reveal Novel Chromosomal Organizations","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Government of Newfoundland and Labrador; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Ocean Frontier Institute","keywords":"Vibrio anguillarum; Biology; Virulence; Salmo; Microbiology; Zoology; Plasmid; Fishery; Genome; Vibrio; Genetics; Gene; Fish <Actinopterygii>; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006207309,0.0002212715,0.0005464295,0.0001154159,0.0000800241,0.00004408145,0.0003257816,0.0001567912,0.0001315854],"category_scores_gemma":[0.0001047749,0.0002351455,0.00009996451,0.001166596,0.0001345013,0.00000853348,0.0003836354,0.0001272954,0.00001749251],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007632264,"about_ca_system_score_gemma":0.0001585858,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000643016,"about_ca_topic_score_gemma":0.003596616,"domain_scores_codex":[0.9985969,0.00006671886,0.0004070772,0.0004985975,0.000131567,0.0002991516],"domain_scores_gemma":[0.999173,0.0000212793,0.0001499878,0.0003127709,0.0002216305,0.0001213157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009261823,0.00008792197,0.05293826,0.000008664754,0.001136913,0.000005343039,0.001591413,0.0002860761,0.9434832,0.000002883921,0.000348241,0.0000184559],"study_design_scores_gemma":[0.001438057,0.0003043835,0.3278928,0.0000108325,0.0003486276,0.000003293059,0.0003675967,0.001284416,0.6654578,0.000006718554,0.002514343,0.000371122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939888,0.0003239872,0.004052737,0.0004213523,0.00005108856,0.0002263541,0.0007792676,0.00001694187,0.0001394573],"genre_scores_gemma":[0.9956871,0.0001017649,0.002131704,0.0003276221,0.0001347045,0.000004809961,0.001500428,0.00003195033,0.00007995691],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2780254,"threshold_uncertainty_score":0.9588956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01538239485913838,"score_gpt":0.2546301855020278,"score_spread":0.2392477906428894,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}