{"id":"W3098326518","doi":"10.3201/eid2612.201221","title":"Trends in Population Dynamics of<i>Escherichia coli</i>Sequence Type 131, Calgary, Alberta, Canada, 2006–20161","year":2020,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Agence Nationale de la Recherche","keywords":"Subclade; Clade; Escherichia coli; Incidence (geometry); Population; Whole genome sequencing; Biology; Antimicrobial; Multilocus sequence typing; Drug resistance; Medicine; Demography; Microbiology; Phylogenetic tree; Genome; Genetics; Gene; Genotype; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005080882,0.0004514967,0.0002808266,0.00208375,0.0008559888,0.001086484,0.001306435,0.0006319369,0.003746472],"category_scores_gemma":[0.001459984,0.0002201107,0.0003890088,0.003753621,0.0004766422,0.0003458816,0.0004554691,0.0007797211,0.0007835089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02566287,"about_ca_system_score_gemma":0.02840175,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9905249,"about_ca_topic_score_gemma":0.9922935,"domain_scores_codex":[0.9994144,0.00003365349,0.00003660993,0.00009558767,0.0002185331,0.0002012289],"domain_scores_gemma":[0.9977124,0.00006513235,0.0002945329,0.00004506108,0.00154091,0.0003419555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002381053,0.00007130233,0.9376325,0.0002042551,0.0001452045,0.0001939788,0.0008556333,0.001533014,0.001329726,0.0007715736,0.02413671,0.03288795],"study_design_scores_gemma":[0.000005650665,0.00001438562,0.9930313,0.00003708273,0.00001136255,0.00004595109,0.0004324316,0.0005497033,0.00006719447,0.00001983688,0.005777729,0.000007466408],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9110659,0.008283533,0.001076164,0.003131087,0.0001843637,0.0001036067,0.05986737,0.0002785437,0.01600935],"genre_scores_gemma":[0.9493604,0.0042346,0.001770289,0.0007083642,0.00005550067,0.000054327,0.02825601,0.00004062499,0.01552001],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02566287,"threshold_uncertainty_score":0.186198,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007216244033662616,"score_gpt":0.2388464813889305,"score_spread":0.2316302373552679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}