{"id":"W3099069638","doi":"10.1101/274688","title":"Proteome-wide Prediction of Lysine Methylation Reveals Novel Histone Marks and Outlines the Methyllysine Proteome","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital; University of Guelph; Western University; Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Methylation; Proteome; Histone; Computational biology; Protein methylation; In silico; Biology; Histone methylation; Methyltransferase; Chemistry; Biochemistry; DNA methylation; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007063652,0.0004031793,0.0003343251,0.0005336939,0.0002088333,0.0005784983,0.0002364386,0.0003051159,0.0009434618],"category_scores_gemma":[0.0006189927,0.0001787535,0.0004228459,0.0004929916,0.0001573384,0.0002768943,0.0003719823,0.0003826053,0.0005275405],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002320857,"about_ca_system_score_gemma":0.0002365392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008500803,"about_ca_topic_score_gemma":0.001096329,"domain_scores_codex":[0.9998345,0.00002430204,0.00001137863,0.00007281841,0.0000421708,0.00001478865],"domain_scores_gemma":[0.9996673,0.00009230697,0.00009792067,0.00004268791,0.00005558507,0.00004419443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0007577502,0.00005608823,0.07206409,0.0002011472,0.0002385666,0.0001957302,0.0001028485,0.005248617,0.9019037,0.0004038579,0.001160513,0.01766706],"study_design_scores_gemma":[0.00007759671,0.0003154619,0.3099157,0.00002918394,0.0002694518,0.001083178,0.0001924226,0.142867,0.5309501,0.002566052,0.01166616,0.00006776694],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9665487,0.0007996224,0.02570811,0.000181388,0.00001960451,0.00002012082,0.005146889,0.0007360997,0.0008395257],"genre_scores_gemma":[0.9650767,0.0002525338,0.02693404,0.00005388412,0.00001041843,0.00001394542,0.007121005,0.00008825603,0.0004491097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009434618,"threshold_uncertainty_score":0.003735662,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01591316110379986,"score_gpt":0.2447968115963857,"score_spread":0.2288836504925858,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}