{"id":"W3099269015","doi":"10.1093/database/baaa096","title":"The IMEx coronavirus interactome: an evolving map of <i>Coronaviridae</i> –host molecular interactions","year":2020,"lang":"en","type":"article","venue":"Database","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Discovery Centre; University Health Network","funders":"H2020 European Research Council; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Cancer Institute; Wellcome Trust; National Human Genome Research Institute; National Institute of Mental Health; National Heart, Lung, and Blood Institute; National Eye Institute; National Institute on Aging; Associazione Italiana per la Ricerca sul Cancro; Fondation pour la Recherche Médicale; Canada Foundation for Innovation; European Molecular Biology Laboratory; Natural Sciences and Engineering Research Council of Canada; International Business Machines Corporation","keywords":"Interactome; Coronaviridae; Coronavirus disease 2019 (COVID-19); Coronavirus; Computational biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Pandemic; Proteomics; Biology; Computer science; Disease; Medicine; Genetics; Infectious disease (medical specialty); Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001054875,0.001196429,0.001420093,0.00742335,0.001014022,0.002579738,0.001252553,0.001254297,0.00514852],"category_scores_gemma":[0.004021565,0.0003735918,0.001094776,0.01005504,0.0004731975,0.002027645,0.003222458,0.001301936,0.004419186],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001158099,"about_ca_system_score_gemma":0.00175452,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004746558,"about_ca_topic_score_gemma":0.009451559,"domain_scores_codex":[0.9985664,0.0002220162,0.0001811957,0.0004889528,0.0003883777,0.0001530029],"domain_scores_gemma":[0.9979365,0.0006088298,0.0004623361,0.0003768549,0.0002762753,0.0003392709],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.002298311,0.0003097443,0.08794075,0.02263707,0.001528989,0.002988242,0.002170464,0.005658235,0.06797586,0.02056855,0.6592479,0.126676],"study_design_scores_gemma":[0.00009806584,0.0001443192,0.1180712,0.001698161,0.000480387,0.002299646,0.0007522329,0.005292032,0.00894178,0.01042874,0.851673,0.0001204684],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.05134452,0.01686401,0.005518164,0.001591938,0.0001756806,0.0001099301,0.9137073,0.002760316,0.007928076],"genre_scores_gemma":[0.02291315,0.004685189,0.008653675,0.0004477145,0.00005471132,0.0001633729,0.9617709,0.0001878847,0.001123453],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00742335,"threshold_uncertainty_score":0.01722354,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02022750701950962,"score_gpt":0.2844711788815303,"score_spread":0.2642436718620207,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}