{"id":"W3099496190","doi":"10.1093/nar/gkaa1004","title":"The Transporter Classification Database (TCDB): 2021 update","year":2020,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":473,"is_retracted":false,"has_abstract":true,"ca_institutions":"Wilfrid Laurier University","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Identification (biology); Transporter; Database; Computational biology; Protein family; Bioinformatics; Genetics; Computer science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009312417,0.0001005028,0.0000829345,0.00002218872,0.0003619934,0.00008251944,0.0005471501,0.0001168496,0.0003233502],"category_scores_gemma":[0.0002126432,0.00007271294,0.00006387523,0.000182272,0.0001637156,0.000006379006,0.0001172193,0.0002279276,0.0004572614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009649243,"about_ca_system_score_gemma":0.00008475585,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006515151,"about_ca_topic_score_gemma":0.000007690081,"domain_scores_codex":[0.9984058,0.000266313,0.0001694747,0.0003872601,0.0004086964,0.0003624226],"domain_scores_gemma":[0.9990703,0.00003626218,0.00003074984,0.0005646622,0.0001359397,0.0001620133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000171766,0.0000185452,0.0001359021,0.00001038509,0.0000218991,0.000005151329,0.00005467477,8.592504e-7,0.9527457,0.001215455,0.0148244,0.03079523],"study_design_scores_gemma":[0.0002024728,0.0001600219,0.0006027647,0.00000663552,0.000004845255,0.00000200867,0.0002189345,0.0002344807,0.3756305,0.0001798324,0.6226534,0.000104037],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.881882,0.003484112,0.02622962,0.06856739,0.0003461816,0.001580897,0.0001955725,0.00006144085,0.01765276],"genre_scores_gemma":[0.9957826,0.001391509,0.0007352925,0.0004736854,0.0004599502,0.00006664133,0.0001443603,0.00002924645,0.0009167357],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.607829,"threshold_uncertainty_score":0.5877323,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06664034700677715,"score_gpt":0.3296742821295862,"score_spread":0.263033935122809,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}