{"id":"W3099633864","doi":"10.3390/v12111302","title":"Analysis of Whole-Genome Sequences of Infectious laryngotracheitis Virus Isolates from Poultry Flocks in Canada: Evidence of Recombination","year":2020,"lang":"en","type":"article","venue":"Viruses","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Provincial Laboratory of Public Health; Agriculture Food and Rural Development; Fonds de Recherche du Québec - Santé; Université de Montréal; Ministry of Agriculture; University of Calgary","funders":"Alberta Agriculture and Forestry","keywords":"Biology; Virology; Genome; Phylogenetic tree; Virus; Virulence; Attenuated vaccine; Recombination; Genetics; Outbreak; Viral shedding; Flock; Recombinant virus; Gene; Recombinant DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000188825,0.0003956023,0.000404952,0.001862099,0.00128317,0.0007619362,0.000385846,0.0003353463,0.000473729],"category_scores_gemma":[0.0006665365,0.0001592991,0.0003474172,0.003040249,0.0004771857,0.0001092977,0.000342642,0.0003827023,0.0001639758],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005107212,"about_ca_system_score_gemma":0.006928749,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8562403,"about_ca_topic_score_gemma":0.9207567,"domain_scores_codex":[0.9995514,0.00001450169,0.00001848776,0.000104974,0.000164296,0.0001463615],"domain_scores_gemma":[0.999176,0.00006345977,0.0001337978,0.00002413052,0.0004003257,0.0002023757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001087311,0.0001269946,0.561038,0.000445261,0.0002248477,0.001816419,0.005219722,0.001366153,0.3905833,0.0003244074,0.0007679006,0.03699975],"study_design_scores_gemma":[0.000006598852,0.00009564001,0.9905566,0.00002854658,0.00006217446,0.0005071671,0.001563356,0.0004157044,0.003695716,0.00001477265,0.003039645,0.0000141961],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949608,0.0007245046,0.0003642956,0.00003084823,0.000005168557,0.00003697836,0.002781412,0.00001062819,0.001085216],"genre_scores_gemma":[0.9854768,0.0008157691,0.002150071,0.00008226273,0.000004642557,0.0000249289,0.009991368,0.00001263869,0.001441463],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1437597,"threshold_uncertainty_score":0.2892126,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04256159711382673,"score_gpt":0.2894445518765372,"score_spread":0.2468829547627105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}