{"id":"W3099633864","doi":"10.3390/v12111302","title":"Analysis of Whole-Genome Sequences of Infectious laryngotracheitis Virus Isolates from Poultry Flocks in Canada: Evidence of Recombination","year":2020,"lang":"en","type":"article","venue":"Viruses","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Provincial Laboratory of Public Health; Agriculture Food and Rural Development; Fonds de Recherche du Québec - Santé; Université de Montréal; Ministry of Agriculture; University of Calgary","funders":"Alberta Agriculture and Forestry","keywords":"Biology; Virology; Genome; Phylogenetic tree; Virus; Virulence; Attenuated vaccine; Recombination; Genetics; Outbreak; Viral shedding; Flock; Recombinant virus; Gene; Recombinant DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008197877,0.000111944,0.0005490473,0.000242583,0.00001950707,0.000003443645,0.00006841638,0.00006265213,0.0002944227],"category_scores_gemma":[0.0002079945,0.000101571,0.0001021268,0.001122995,0.00004844161,0.0001663023,0.0000227317,0.0000995088,0.000003755011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001807805,"about_ca_system_score_gemma":0.0004801426,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.904859,"about_ca_topic_score_gemma":0.5716249,"domain_scores_codex":[0.998942,0.00006667247,0.0005005496,0.0001945904,0.0001865145,0.0001097152],"domain_scores_gemma":[0.9991446,0.0002354796,0.0002508382,0.0001748898,0.0001234115,0.00007079545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006684283,0.0001634463,0.8082467,0.00006585564,0.0007965714,0.00001323531,0.000387179,0.0007060706,0.1858832,0.00000654987,0.000008815513,0.00365554],"study_design_scores_gemma":[0.0009039684,0.0004665883,0.831355,0.0002829077,0.001524779,0.000001822429,0.0003952118,0.0009008766,0.1636064,0.00004901617,0.000380359,0.0001330928],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972432,0.00182893,0.00005626559,0.0001480382,0.00003939847,0.0001399024,0.0004096327,0.00001247063,0.0001221165],"genre_scores_gemma":[0.9991655,0.0004685116,0.00009255729,0.0001932251,0.00001438281,0.000009188784,0.00004343592,0.000008541347,0.000004595629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3332341,"threshold_uncertainty_score":0.4361918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04256159711382673,"score_gpt":0.2894445518765372,"score_spread":0.2468829547627105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}