{"id":"W3099785644","doi":"10.1186/s12967-020-02579-3","title":"Revealing oral microbiota composition and functionality associated with heavy cigarette smoking","year":2020,"lang":"en","type":"article","venue":"Journal of Translational Medicine","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Christie (Canada)","funders":"University of Sharjah","keywords":"Firmicutes; Prevotella; Fusobacterium; Veillonella; Proteobacteria; Bacteroidetes; Nicotine; Nicotine patch; Biology; Fusobacteria; Microbiology; Actinobacteria; Physiology; Medicine; Bacteroides; Bacteria; Pathology; Genetics; Streptococcus; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006001018,0.0001019061,0.000300167,0.00007277074,0.0001278733,0.00001837259,0.00008363205,0.0000975193,0.0005772125],"category_scores_gemma":[0.0001067717,0.00007426335,0.00005070227,0.0001803646,0.0002004852,0.0001603394,0.000008669466,0.0004668235,0.000002279045],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002770036,"about_ca_system_score_gemma":0.00006303912,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001351317,"about_ca_topic_score_gemma":0.00002438551,"domain_scores_codex":[0.9988504,0.0001656724,0.0004135167,0.0001279148,0.0003111617,0.0001313345],"domain_scores_gemma":[0.9991108,0.0002108585,0.0002176605,0.00004101333,0.0002953011,0.0001244253],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004838997,0.0001889348,0.5456735,0.0001973084,0.00151759,0.0006202379,0.001453482,0.0004690266,0.4236053,0.0006755196,0.01696164,0.003798457],"study_design_scores_gemma":[0.005764844,0.0009192203,0.9847944,0.0007697266,0.0002578971,0.001274381,0.00009544285,0.0002001578,0.001981756,0.0002753659,0.003484187,0.0001826413],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9673514,0.001355941,0.003471598,0.02730271,0.0002288452,0.00008149958,0.00006630483,0.00001082807,0.0001308322],"genre_scores_gemma":[0.9977445,0.00002376352,0.0004150783,0.001250752,0.000414429,4.662057e-7,0.000104722,0.000009117489,0.00003714783],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4391209,"threshold_uncertainty_score":0.6320072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04996142216478759,"score_gpt":0.3074118873954544,"score_spread":0.2574504652306668,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}