{"id":"W3100471207","doi":"10.1155/2020/7092053","title":"Investigation of Two <i>Mycobacterium abscessus</i> Outbreaks in Quebec Using Whole Genome Sequencing","year":2020,"lang":"en","type":"article","venue":"BioMed Research International","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère de la Santé et des Services Sociaux (Québec); Ottawa Public Health; University of Manitoba; Institut National de Santé Publique du Québec; Centre Hospitalier Universitaire Sainte-Justine; Public Health Agency of Canada","funders":"","keywords":"Outbreak; Multilocus sequence typing; Mycobacterium abscessus; Genotyping; Nontuberculous mycobacteria; Biology; Typing; Whole genome sequencing; Housekeeping gene; Genotype; Genome; Virology; Microbiology; Mycobacterium; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004727064,0.0005072114,0.0003508213,0.001034439,0.002466613,0.0009099403,0.0007157923,0.000867556,0.001291948],"category_scores_gemma":[0.001009434,0.0002169206,0.0003506693,0.001158139,0.000550258,0.0002553711,0.0005184292,0.0005468706,0.0001418166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009632342,"about_ca_system_score_gemma":0.007828061,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.955695,"about_ca_topic_score_gemma":0.9711753,"domain_scores_codex":[0.9994937,0.0000527446,0.00002215815,0.0001305961,0.0001469408,0.000153845],"domain_scores_gemma":[0.9988864,0.0001128336,0.0002119609,0.00003644452,0.0005352451,0.0002171106],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005450437,0.0002330753,0.9032035,0.000216617,0.0002061354,0.007395246,0.004079537,0.00141129,0.04932491,0.0003868081,0.003473267,0.02952462],"study_design_scores_gemma":[0.00002247756,0.0001765158,0.9870294,0.000045162,0.00005670627,0.001180323,0.002373588,0.001642553,0.002652602,0.00002546014,0.004766535,0.00002866286],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923531,0.00058042,0.0009317281,0.0003249948,0.00001956341,0.0001886894,0.002588837,0.00003585509,0.0029769],"genre_scores_gemma":[0.9922675,0.0004274624,0.002186793,0.0003918168,0.00001144754,0.00005954862,0.002449241,0.00001766001,0.002188385],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04430503,"threshold_uncertainty_score":0.08913183,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1662481702490161,"score_gpt":0.3927465919210679,"score_spread":0.2264984216720519,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}