{"id":"W3100992234","doi":"10.1186/s40168-020-00935-5","title":"Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Food and Agriculture; National Institutes of Health; Foundation for Food and Agriculture Research; National Institute of Allergy and Infectious Diseases; University of Texas Southwestern Medical Center; North Carolina State University; U.S. Department of Agriculture; Howard Hughes Medical Institute","keywords":"Biology; Microbial ecology; Medical microbiology; DNA sequencing; Computational biology; DNA; Genetics; Metagenomics; Evolutionary biology; Microbiology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009318308,0.001009809,0.0005325731,0.001370766,0.0005962024,0.0008460517,0.0007371732,0.001047188,0.004589093],"category_scores_gemma":[0.001852315,0.0003901355,0.0005287802,0.0007311141,0.0009596221,0.0006700909,0.0008793649,0.001453681,0.002351229],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004888149,"about_ca_system_score_gemma":0.000628347,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001003422,"about_ca_topic_score_gemma":0.001786015,"domain_scores_codex":[0.9991193,0.0001193961,0.00003708432,0.0002835059,0.0003717912,0.00006890323],"domain_scores_gemma":[0.9987679,0.0004230037,0.0002929981,0.0001573913,0.0002151246,0.0001436119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001217052,0.0000620327,0.002289703,0.000192279,0.00003055421,0.0001559645,0.0001889405,0.000492261,0.9743354,0.0008482044,0.001884256,0.01939863],"study_design_scores_gemma":[0.00002130923,0.0003710455,0.006862428,0.00006489475,0.00004156228,0.0005130336,0.0001992662,0.01434089,0.9653003,0.001143826,0.01107807,0.00006348972],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.293668,0.001464156,0.6636039,0.0009997606,0.0005405724,0.0008929429,0.01570114,0.01264437,0.0104852],"genre_scores_gemma":[0.4176292,0.003031193,0.5429836,0.001422421,0.0001826658,0.001664531,0.01639016,0.002428073,0.01426826],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.004589093,"threshold_uncertainty_score":0.01535201,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01051585908622182,"score_gpt":0.2143153924435416,"score_spread":0.2037995333573198,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}