{"id":"W3101058692","doi":"10.1186/s12859-020-03734-9","title":"MADA: a web service for analysing DNA methylation array data","year":2020,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"National Key Research and Development Program of China; Higher Education Discipline Innovation Project; National Natural Science Foundation of China","keywords":"DNA methylation; Methylation; Workflow; Bioconductor; Computer science; Computational biology; Visualization; Bioinformatics; Data mining; Biology; Database; Genetics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00320409,0.003177898,0.002048296,0.004689748,0.001147369,0.002864312,0.003457888,0.002190756,0.05771936],"category_scores_gemma":[0.007454883,0.001458442,0.003025966,0.002501738,0.0006058828,0.002435341,0.004560933,0.002546825,0.04504056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001700449,"about_ca_system_score_gemma":0.002169015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004502913,"about_ca_topic_score_gemma":0.004312937,"domain_scores_codex":[0.9984212,0.0003245025,0.0002094191,0.000346326,0.0005168531,0.0001816352],"domain_scores_gemma":[0.9960556,0.001835667,0.0003830821,0.0006836052,0.000525312,0.0005167585],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.005154503,0.0005566587,0.01476686,0.004141479,0.001358308,0.002074007,0.0009497327,0.006719918,0.0934415,0.007235111,0.5659943,0.2976076],"study_design_scores_gemma":[0.001700262,0.0003321127,0.02356121,0.0006078887,0.0004198148,0.002445605,0.0003905676,0.1555548,0.09594305,0.02276629,0.6953924,0.0008859549],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003312565,0.0003686452,0.1297316,0.0004587461,0.0001560894,0.0004409268,0.03737884,0.8254987,0.002653854],"genre_scores_gemma":[0.07429006,0.00129767,0.5651292,0.003401563,0.0004071262,0.005381267,0.2128404,0.1206089,0.0166439],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.05771936,"threshold_uncertainty_score":0.1930904,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08744543724510032,"score_gpt":0.3051757837573827,"score_spread":0.2177303465122824,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}