{"id":"W3101662713","doi":"10.1186/s12866-020-01991-5","title":"Stool microbiome, pH and short/branched chain fatty acids in infants receiving extensively hydrolyzed formula, amino acid formula, or human milk through two months of age","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Children's Health Research Institute; University of Nebraska-Lincoln; Mead Johnson Nutrition","keywords":"Biology; Infant formula; Feces; Firmicutes; Bacteroidetes; Beta diversity; Bifidobacterium; Animal science; Short-chain fatty acid; Amino acid; Hydrolyzed protein; Food science; Butyrate; Hydrolysis; Lactobacillus; Biochemistry; Microbiology; 16S ribosomal RNA; Ecology; Fermentation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004120336,0.0004718383,0.001177542,0.0002917931,0.0002374827,0.00003271507,0.0003424169,0.0004473609,0.0001189771],"category_scores_gemma":[0.0002161555,0.0004380723,0.0001752817,0.000479883,0.0003370345,0.0002790031,0.0001906785,0.0004969235,0.0000194365],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001328395,"about_ca_system_score_gemma":0.00007752138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000286572,"about_ca_topic_score_gemma":0.00248781,"domain_scores_codex":[0.9966177,0.0003693864,0.001194783,0.000807704,0.00008535293,0.0009251233],"domain_scores_gemma":[0.998735,0.0002254725,0.0003469445,0.0003987861,0.0001290043,0.0001647831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002375904,0.0001534356,0.01565422,0.0005422912,0.00003462702,0.00004894931,0.005247724,0.000006055537,0.9739283,0.0001029009,0.0009766592,0.0009288903],"study_design_scores_gemma":[0.01876967,0.001836731,0.07213748,0.0006852252,0.0001142466,0.0003717612,0.00107318,0.0006299411,0.8924953,0.000514903,0.009988814,0.001382777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954388,0.0008372168,0.0005720197,0.0008265219,0.0003274656,0.001297854,0.0002997627,0.0001166907,0.0002836611],"genre_scores_gemma":[0.9884037,0.0001075357,0.006558239,0.004236678,0.0001823834,0.00004035536,0.0003619398,0.00006600232,0.00004321706],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08143307,"threshold_uncertainty_score":0.9998071,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04534495075457338,"score_gpt":0.3139094703303028,"score_spread":0.2685645195757294,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}