{"id":"W3101662713","doi":"10.1186/s12866-020-01991-5","title":"Stool microbiome, pH and short/branched chain fatty acids in infants receiving extensively hydrolyzed formula, amino acid formula, or human milk through two months of age","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Children's Health Research Institute; University of Nebraska-Lincoln; Mead Johnson Nutrition","keywords":"Biology; Infant formula; Feces; Firmicutes; Bacteroidetes; Beta diversity; Bifidobacterium; Animal science; Short-chain fatty acid; Amino acid; Hydrolyzed protein; Food science; Butyrate; Hydrolysis; Lactobacillus; Biochemistry; Microbiology; 16S ribosomal RNA; Ecology; Fermentation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005103357,0.0002997155,0.0006385046,0.0002265654,0.0002770596,0.0003083537,0.000183082,0.0003997116,0.0005636283],"category_scores_gemma":[0.001088542,0.0002109653,0.0003184009,0.0001909903,0.0002127632,0.0002579715,0.0003104053,0.0003948539,0.000101823],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003519685,"about_ca_system_score_gemma":0.0002865564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001453022,"about_ca_topic_score_gemma":0.001640408,"domain_scores_codex":[0.9996982,0.00007301625,0.00002182274,0.00008897359,0.00004764498,0.00007041244],"domain_scores_gemma":[0.9995028,0.00007140644,0.0001667946,0.00002421714,0.00006291076,0.0001718752],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.07202639,0.004178139,0.8258072,0.0003038177,0.0004012098,0.0004763296,0.0008241088,0.0001609842,0.07322741,0.00002832665,0.0003350884,0.02223102],"study_design_scores_gemma":[0.0001728019,0.0189433,0.9769671,0.00001794375,0.0001593891,0.0002386233,0.000209856,0.0001501239,0.002946271,0.00001109784,0.0001763289,0.000007172179],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997728,0.0001068838,0.00001798849,0.000004000646,0.000001490922,0.000009169351,0.000057496,0.000001103306,0.00002890521],"genre_scores_gemma":[0.9993363,0.00008763724,0.0001566858,0.00002055094,0.000002793925,0.00003408082,0.0002016715,0.000001337835,0.0001589897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001453022,"threshold_uncertainty_score":0.002889156,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04534495075457338,"score_gpt":0.3139094703303028,"score_spread":0.2685645195757294,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}