{"id":"W3101787203","doi":"10.1016/j.ctro.2020.11.007","title":"Longitudinal characterization of the tumoral microbiome during radiotherapy in HPV-associated oropharynx cancer","year":2020,"lang":"en","type":"article","venue":"Clinical and Translational Radiation Oncology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Biomedical Imaging and Bioengineering; University of Texas MD Anderson Cancer Center","keywords":"Medicine; Radiation therapy; Microbiome; Internal medicine; Prospective cohort study; Cancer; Gastroenterology; Stage (stratigraphy); Primary tumor; Oncology; Metastasis; Bioinformatics; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001525126,0.00007424863,0.0001858696,0.00002171028,0.00005027848,0.000004151796,0.00007143491,0.000160315,0.00005945908],"category_scores_gemma":[0.00003738335,0.00006184193,0.00006716655,0.0001272565,0.000119181,0.000006177877,0.00001341488,0.0001147734,7.637319e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000132199,"about_ca_system_score_gemma":0.000205716,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001498068,"about_ca_topic_score_gemma":0.00007945817,"domain_scores_codex":[0.9990737,0.0001564803,0.0004034862,0.000207913,0.00004965575,0.0001087112],"domain_scores_gemma":[0.9996631,0.00002994433,0.0001567668,0.00005343991,0.00004148698,0.0000552812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002065382,0.00008108201,0.4829483,0.00001663973,0.00002572255,5.777246e-7,0.00009916706,0.00004123049,0.5137394,0.00003414552,0.00003134553,0.002775794],"study_design_scores_gemma":[0.002137249,0.000163375,0.9880977,0.000007450545,0.00001066536,0.000002684836,0.000003146189,0.0002478747,0.004671355,0.00001280755,0.00458099,0.00006473365],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906529,0.000441117,0.00009531165,0.008349203,0.0001706273,0.0001769064,0.00009057565,0.000003689626,0.00001962841],"genre_scores_gemma":[0.9973086,0.00111045,0.00005957213,0.001082493,0.0002279433,0.00000735218,0.000162688,0.000007486608,0.00003337605],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5090681,"threshold_uncertainty_score":0.2521841,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03178978439202762,"score_gpt":0.3519381518407722,"score_spread":0.3201483674487446,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}