{"id":"W3102578546","doi":"10.1101/2020.11.12.20230748","title":"Performance of Saliva, Oropharyngeal Swabs, and Nasal Swabs for SARS-CoV-2 Molecular Detection: A Systematic Review and Meta-analysis","year":2020,"lang":"en","type":"review","venue":"medRxiv","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Saliva; Medicine; Gold standard (test); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Meta-analysis; Coronavirus disease 2019 (COVID-19); Nucleic Acid Amplification Tests; Sample size determination; Internal medicine; Virology; Statistics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0157588,0.002482983,0.01825275,0.008555414,0.0007316665,0.003818201,0.002476997,0.002263802,0.00341299],"category_scores_gemma":[0.05124779,0.001357318,0.03432706,0.008523243,0.001022583,0.002170759,0.001523828,0.001603358,0.0003314587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00284726,"about_ca_system_score_gemma":0.004482115,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007218848,"about_ca_topic_score_gemma":0.01425631,"domain_scores_codex":[0.9879277,0.004753478,0.004104102,0.001442732,0.001420382,0.0003515976],"domain_scores_gemma":[0.9492893,0.04043131,0.005873648,0.000973108,0.003081479,0.000351231],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.001274865,0.00002670999,0.006068656,0.6036966,0.3740739,0.0001120113,0.0001087972,0.0003476234,0.0002116745,0.0001354484,0.0006741941,0.01326947],"study_design_scores_gemma":[0.0003140007,0.0001880288,0.005069781,0.0634792,0.9285107,0.0001264275,0.00006707074,0.000145657,0.0001220505,0.0002111126,0.001737956,0.00002819065],"study_design_candidate":"meta_analysis","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.003160852,0.9955758,0.000246343,0.0001639133,0.00008685884,0.0001487165,0.0004456553,0.00001288946,0.0001589939],"genre_scores_gemma":[0.1254597,0.8697754,0.001494525,0.001040615,0.0002710935,0.0007949214,0.0009210931,0.00003247609,0.0002102474],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.01825275,"threshold_uncertainty_score":0.08334148,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1119394925257584,"score_gpt":0.3619494223216321,"score_spread":0.2500099297958737,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}