{"id":"W3102689110","doi":"10.22215/etd/2020-14165","title":"Population Genetics of Antimicrobial Resistance in Campylobacter isolates from across Canada","year":2020,"lang":"en","type":"dissertation","venue":"","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Campylobacter jejuni; Campylobacter; Antibiotic resistance; Biology; Population; Virulence; Genetics; Antimicrobial; Microbiology; Antibiotics; Gene; Medicine; Environmental health; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004231228,0.0003036309,0.0003371082,0.001726794,0.002719156,0.001070166,0.0006948857,0.0002638728,0.001657746],"category_scores_gemma":[0.001282034,0.0002388724,0.0003312243,0.00369096,0.0005384481,0.0001270843,0.0006374613,0.0003680254,0.000133254],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02707138,"about_ca_system_score_gemma":0.01895601,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.994696,"about_ca_topic_score_gemma":0.9962943,"domain_scores_codex":[0.9994784,0.00003385558,0.00001885109,0.0001454274,0.0001434548,0.0001800827],"domain_scores_gemma":[0.9992322,0.00006102838,0.0000573478,0.0000261528,0.0004908884,0.0001324147],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003891973,0.0000615661,0.9346011,0.00008759699,0.0002484134,0.0004393297,0.007318037,0.003145391,0.01289676,0.001055674,0.00179145,0.03796546],"study_design_scores_gemma":[0.000008111138,0.00002569321,0.9912548,0.00002380509,0.00004135822,0.00007128771,0.003610936,0.001344512,0.0006332438,0.00008194296,0.002886997,0.00001721465],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956366,0.0003827593,0.0002953782,0.00009072473,0.00000334068,0.00002855987,0.001327416,0.000009906389,0.002225262],"genre_scores_gemma":[0.9953549,0.0004253074,0.0005828651,0.00005260771,0.000001158299,0.00001150424,0.001433275,0.000009543196,0.002128759],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02707138,"threshold_uncertainty_score":0.1964175,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01397213414667951,"score_gpt":0.2372346669085998,"score_spread":0.2232625327619203,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}