{"id":"W3102800937","doi":"10.1111/1462-2920.15317","title":"Communal living: glycan utilization by the human gut microbiota","year":2020,"lang":"en","type":"review","venue":"Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Glycan; Biology; Microbiome; Metagenomics; Host (biology); Gut flora; Generalist and specialist species; Computational biology; Evolutionary biology; Ecology; Bioinformatics; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001909654,0.0006725009,0.0009944867,0.00004897037,0.0004339298,0.00003765465,0.0009842366,0.0008569541,0.0003919252],"category_scores_gemma":[0.00001490403,0.0005126396,0.0004742831,0.00008899958,0.0005675224,0.000003070968,0.0008771315,0.0006395807,0.0004082909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001557151,"about_ca_system_score_gemma":0.0001077984,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002319247,"about_ca_topic_score_gemma":0.00002254593,"domain_scores_codex":[0.9971649,0.0006661055,0.0006819868,0.0008662629,0.00004664507,0.0005740935],"domain_scores_gemma":[0.9985726,0.00004684759,0.0004416576,0.0008055666,0.000005364009,0.0001279882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000006004611,0.0001448143,0.00003075623,0.0005588387,0.0002198357,0.000003091211,0.0000505143,9.597518e-8,0.8637885,0.00001034454,0.07087105,0.06431619],"study_design_scores_gemma":[0.0001812704,0.0002520194,0.00004166191,0.0003707158,0.0002151746,0.0004644323,0.00003763166,1.242103e-7,0.0008365177,0.000001173663,0.9971027,0.0004965505],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00133433,0.9955386,0.00002763523,0.0001215473,0.0002642191,0.000872403,0.001625266,0.0000214982,0.0001945012],"genre_scores_gemma":[0.002390028,0.9786502,0.00004793608,0.0009216429,0.0003188982,0.00005313773,0.01565059,0.0001203243,0.001847306],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9262317,"threshold_uncertainty_score":0.9997325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02983521902512323,"score_gpt":0.2977345689901613,"score_spread":0.2678993499650381,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}